Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,238,366 – 12,238,462 |
Length | 96 |
Max. P | 0.520589 |
Location | 12,238,366 – 12,238,462 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 75.31 |
Mean single sequence MFE | -20.06 |
Consensus MFE | -7.78 |
Energy contribution | -10.98 |
Covariance contribution | 3.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.76 |
Structure conservation index | 0.39 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.520589 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12238366 96 - 22407834 G--AAAACUAAGAGGAAUGUGCGCGGAAAACUGCGAAUAAAAAAAAAAUUGCAAGAGAAAAUCGCGCUAGACGGGAAAAACUCUCGUUCUCUGCGCUU .--.................(((((((.((((((((............))))).((((...((.((.....)).)).....))))))).))))))).. ( -22.90) >DroSec_CAF1 61774 94 - 1 G--AAAACUAAGAGGAAUGUGCGCGGAAAACUGCGAAUAAAA--AAAACGGCAAGGGAAAAUCGCGCUAGACGGGAAAAACUCUCGUUCUCGGCGCUU .--..............(((.(((((....))))).)))...--...................(((((((((((((.....))))).))).))))).. ( -22.90) >DroSim_CAF1 63147 94 - 1 G--AAAACUAAGAGGAAUGUGCGCGGAAAACUGCGAAUAAAA--AAAAUGGAAAGAGAAAAUCGCGCUAGACGGGAAAAACUCUCGUUCUCGGCGCUU .--..............(((.(((((....))))).)))...--...................(((((((((((((.....))))).))).))))).. ( -22.90) >DroYak_CAF1 60915 90 - 1 G--AAAACUAAGAGGAAUGUGCGCGGAAAACUCAGA---GAA--AAAACUGCAAGGGAAAAUCGCGCUAGACGGG-AAAACUCUCGUUCUCUGGGCUU .--....((.((((......((((((....(((((.---...--....)))...)).....))))))..((((((-(....))))))))))).))... ( -21.30) >DroAna_CAF1 56821 77 - 1 AAUAAAAAUAAGAUGGAUG--------AUGCUACAAAUGAAA--AAAAU---------AAGUCGCACUAGA--GGAAAGCGCCUCAAAGCAUGAACUU ..............((.(.--------(((((..........--.....---------.((.....)).((--((......))))..))))).).)). ( -10.30) >consensus G__AAAACUAAGAGGAAUGUGCGCGGAAAACUGCGAAUAAAA__AAAAUGGCAAGAGAAAAUCGCGCUAGACGGGAAAAACUCUCGUUCUCUGCGCUU .....................(((((....)))))............................((((..(((((((.....)))))))....)))).. ( -7.78 = -10.98 + 3.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:05 2006