Locus 4280

Sequence ID 2L_DroMel_CAF1
Location 12,232,062 – 12,232,152
Length 90
Max. P 0.713633
window6750

overview

Window 0

Location 12,232,062 – 12,232,152
Length 90
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 84.43
Mean single sequence MFE -26.93
Consensus MFE -15.61
Energy contribution -16.12
Covariance contribution 0.50
Combinations/Pair 1.24
Mean z-score -3.60
Structure conservation index 0.58
SVM decision value 0.38
SVM RNA-class probability 0.713633
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12232062 90 - 22407834
UUUGUUUUACACACAAUCUGCAGGUGUCCUGUGUGACUUUGACCAGUCGCAGGAC--------CUUUCUCUUUCCG------UGAAUAUCUGUAUCUGUGACUC
...........((((...((((((((((((((..((((......)))))))))))--------..(((.(.....)------.))).)))))))..)))).... ( -23.90)
>DroSec_CAF1 55590 88 - 1
UUUGUUUUACACACAAUCUGCAGGUGUCCUG--UGACUUUGACCAGUCGCAGGAC--------CUUUCUCUUUCCG------ACAAUAUCUGUAUCUGUGACUC
...........((((...(((((((((((((--(((((......)))))))))))--------.....((.....)------)....)))))))..)))).... ( -27.20)
>DroSim_CAF1 56501 88 - 1
UUUGUUUUACACACAAUCUGCAGGUGUCCUG--UGACUUUGGCCAGUCGCAGGAC--------CUUUCUCUUUCCG------AGAAUAUCUGUAUCUGUGACUC
...........((((...(((((((((((((--(((((......)))))))))))--------..(((((.....)------)))).)))))))..)))).... ( -32.80)
>DroEre_CAF1 53613 88 - 1
UUUGUUUUACACACAAUCUGCAGGUGUCCUG--UGACUUUGACCAGUCAGAAAAC--------CUUUCUCUUUCUG------CGGAUAUCUGUAUCUUUGACUC
.............(((..(((((((((((.(--(((((......))))(((((..--------.......))))))------))))))))))))...))).... ( -21.20)
>DroYak_CAF1 54623 88 - 1
UUUGUUUUACACACAAUCUGCAGGUGUCCUG--UGACUUUGACCAGUCACAGGAC--------CUUUCUCUUUCUG------AGCAUAUCUGUGUCUGUGAAUC
...........((((..(.((((((((((((--(((((......)))))))))))--------....(((.....)------))...)))))))..)))).... ( -30.00)
>DroPer_CAF1 96553 100 - 1
UUUGUUUUACACACAAUCUGCAGGUGUUCUA--UGACUUUGACCAGUCAGUGGACCCAUGGACCUCUGUCUGUCUGCCUUUCUGCCUACCUGUAUCUGUGUC--
..........(((((...((((((((.....--(((((......)))))(..(((....((((....)))))))..).........))))))))..))))).-- ( -26.50)
>consensus
UUUGUUUUACACACAAUCUGCAGGUGUCCUG__UGACUUUGACCAGUCACAGGAC________CUUUCUCUUUCCG______AGAAUAUCUGUAUCUGUGACUC
...........((((...(((((((((((((..(((((......)))))))))))................(((.........))).)))))))..)))).... (-15.61 = -16.12 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:04 2006