| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,228,879 – 12,228,978 |
| Length | 99 |
| Max. P | 0.522529 |
| Location | 12,228,879 – 12,228,978 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 75.54 |
| Mean single sequence MFE | -15.10 |
| Consensus MFE | -8.32 |
| Energy contribution | -9.77 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.55 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.522529 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12228879 99 + 22407834 -CCCCUUCCAUUCAACUUUGCACUCGGAAACAAGAGUAAACACAUGUCUGCUGAAAAGCAUCGAAUAACAAAAAAAAA-----------AAAAAGAACACA----CUCACAAAAG -........((((...(((((.((.(....).)).)))))........((((....))))..))))............-----------............----.......... ( -13.20) >DroSec_CAF1 52497 78 + 1 C-CCCUUCUAUUCCACUUUGCACUCGGAAACAAGAGUAAACACAUGUCUGCUGAAAAGCAUCGA--------------------------------GCACA----CUCACAAAAG .-..............(((((.((.(....).)).)))))....(((.((((....))))..((--------------------------------(....----)))))).... ( -13.10) >DroSim_CAF1 53280 97 + 1 CCCCCUUCUAUUCCACUUUGCACUCGGAAACAAGAGUAAACACAUGUCUGCUGAAAAGCAUCGAAUAACAAAAAA--------------AAAAGGAACACA----CUCACAAAAG ..........((((..(((((.((.(....).)).)))))........((((....))))...............--------------....))))....----.......... ( -15.10) >DroEre_CAF1 50401 98 + 1 --CCCUUCUAUUCCGCUUUGCACUCGGAAACAAGAGUAAACACAUGUCUGCUGAAAAGCAUCAAAUAACAAAAAAAAA---------------GGAGCACACUCACUCACAAAAG --........(((((.(((((.((.(....).)).)))))).......((((....))))..................---------------)))).................. ( -15.10) >DroYak_CAF1 51361 103 + 1 --CCCUUCCAUUCCACUUUGCACUCGGAAACAAGAGUAAACACAUGUCUGCUGAAAAGCAUCAAAUAACAAAAAAAAAA----------AAGAAGAACACACUGACUCACAAAAG --..((((........(((((.((.(....).)).)))))........((((....))))...................----------..)))).................... ( -14.10) >DroAna_CAF1 48551 111 + 1 CAUCCUUAUGCCCAUUUUGGCACUCGGAAACAGGAGUAAACACAUGUCUGCUGGAGCGCAUCAAAUAACGGAGAGGACGCAGGACUAAACACACAAACACU----CGCACAAAAG ..(((((...((...((((((.((((....)...((((.((....)).)))).))).))..))))....)).))))).((((.................))----.))....... ( -20.03) >consensus __CCCUUCUAUUCCACUUUGCACUCGGAAACAAGAGUAAACACAUGUCUGCUGAAAAGCAUCAAAUAACAAAAAAAAA___________AA_AAGAACACA____CUCACAAAAG ................(((((.((.(....).)).)))))........((((....))))....................................................... ( -8.32 = -9.77 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:03 2006