| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,221,541 – 12,221,638 |
| Length | 97 |
| Max. P | 0.791008 |
| Location | 12,221,541 – 12,221,638 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 71.98 |
| Mean single sequence MFE | -23.54 |
| Consensus MFE | -10.98 |
| Energy contribution | -11.86 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.47 |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.791008 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12221541 97 - 22407834 UUCUCUCGUUUGCAU-------UGAGUUCGGCUCUCCUGGCCAACUCUUCUCUUCCACAUGUUGCCAUCAUAGCAACCUGUUAGACUGAG----CCC------UGCAUCGGCCC .....(((..((((.-------.(((((.((((.....)))))))))..(((.((.(((.(((((.......))))).)))..))..)))----...------)))).)))... ( -24.40) >DroPse_CAF1 71460 96 - 1 UUCUCUCGUCG-UGGGGGGGGGGGGCUUCGGCUUUG-----------AGCUCUUCCACAUGUUGCCUUCAUAGCAACCUGUUAGACGGAAGAAGGCC------UAUAACUCCUC ((((..(((((-((((((((.(((((....))))).-----------..)))))))))..(((((.......)))))......))))..))))....------........... ( -35.20) >DroSec_CAF1 45179 87 - 1 UUCUCUCGUUCGCAU-------CGAGUUCGGCUCUCCUGGCCGCCACUUCUCUUCCACAUGUUGCCAUCAUAGCAACCUGUUAGACUGAG----U----------------CCC ....((((.((....-------.((((.(((((.....)))))..)))).......(((.(((((.......))))).)))..)).))))----.----------------... ( -19.50) >DroSim_CAF1 43898 87 - 1 UUCUCUCGUUCGCAU-------CGAGUUCGGCUCUCCUGGCCGCCUCUUCUCUUCCACAUGUUGCCAUCAUAGCAACCUGUUAGACUGAG----U----------------CCC ....((((.((....-------.(((..(((((.....))))).))).........(((.(((((.......))))).)))..)).))))----.----------------... ( -20.80) >DroYak_CAF1 44204 103 - 1 UUCUCUCGUUCGCUU-------UCAGUUCGGUUUUCCUGGCCGCCUCUUCUCUUCCACAUGUUGCCAUCAUAGCAACCUGUUAGACUGAG----CCCUUAGACUACAACUUCCC ...........((..-------(((((((((((.....))))).............(((.(((((.......))))).)))..)))))))----)................... ( -17.80) >consensus UUCUCUCGUUCGCAU_______CGAGUUCGGCUCUCCUGGCCGCCUCUUCUCUUCCACAUGUUGCCAUCAUAGCAACCUGUUAGACUGAG____CCC______U__A_C__CCC ....(((......................((((.....))))........(((...(((.(((((.......))))).))).)))..)))........................ (-10.98 = -11.86 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:58 2006