Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,216,307 – 12,216,401 |
Length | 94 |
Max. P | 0.694360 |
Location | 12,216,307 – 12,216,401 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 59.75 |
Mean single sequence MFE | -29.74 |
Consensus MFE | -11.70 |
Energy contribution | -11.62 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.15 |
Mean z-score | -1.83 |
Structure conservation index | 0.39 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.694360 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12216307 94 + 22407834 AUUCAAUU--GACAAUUUUCGGAGGGGCCGAUGCAGGGC----UCAGUCUAACAGGUUGCUA-UGAUGGCAACAUGUGGAAGA--GAA-GAGUUG--------GCC---AGGAGA ........--.....(((((.....(((((((......(----((..((((.((.((((((.-....)))))).)))))).))--)..-..))))--------)))---.))))) ( -27.40) >DroVir_CAF1 48699 103 + 1 AUUCA-----UACAGCCAGC--AGCGG-UCUCGCAAGGA----UGUGUCUAACAGGUUGCUGGCCACGGCAACAUGUGGACGCACGAGCGAGGCGAUUUGCACAGCCGAGCGAAA ..((.-----....((....--.)).(-((((((..(..----((((((((.((.(((((((....))))))).)))))))))))..)))))))))(((((........))))). ( -38.70) >DroGri_CAF1 52430 100 + 1 AUACAACCAGUACAACCAUC--CAGAG-ACUCGCAAGGA----UG--UCUAACAGGUUGCUGGCCAUGGCAACAUGUGGACGC--GAACGAAUCGCG----GCUCCCAAACGAAA ......((((..(((((...--.(((.-(..(....)..----).--)))....))))))))).((((....))))(((.(((--((.....)))))----....)))....... ( -31.00) >DroEre_CAF1 43281 93 + 1 AUUCAAUU--GACAAUUUUCGGAGGGG-CGAUGCAGGGC----UCAGUCUAACAGGUUGCUA-UGAUGGCAACAUGUGGAAGA--GAA-GAGGCG--------GCC---ACGAAA ........--......(((((....((-(..(((....(----((..((((.((.((((((.-....)))))).)))))).))--)..-...)))--------)))---.))))) ( -25.30) >DroPer_CAF1 76724 87 + 1 CGGAAUGC--CACAAUGCUCUAAGGAGGAGUUAUAGGCCUUCUUCCGUCUAACAGGUUGCUA-UGAAGGCAACAUGUGGAAGA--GCU-----------------------CAAA .((....)--).....(((((..(((((((.........))))))).((((.((.((((((.-....)))))).)))))))))--)).-----------------------.... ( -26.30) >consensus AUUCAAUC__GACAAUCAUC__AGGGG_AGUUGCAGGGC____UCAGUCUAACAGGUUGCUA_UGAUGGCAACAUGUGGAAGA__GAA_GAGGCG________GCC___ACGAAA ...............................................((((.((.(((((((....))))))).))))))................................... (-11.70 = -11.62 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:55 2006