Locus 4271

Sequence ID 2L_DroMel_CAF1
Location 12,207,688 – 12,207,800
Length 112
Max. P 0.850923
window6737

overview

Window 7

Location 12,207,688 – 12,207,800
Length 112
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 85.28
Mean single sequence MFE -37.56
Consensus MFE -25.26
Energy contribution -25.90
Covariance contribution 0.64
Combinations/Pair 1.10
Mean z-score -2.38
Structure conservation index 0.67
SVM decision value 0.79
SVM RNA-class probability 0.850923
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12207688 112 + 22407834
CAAAGCUUCAACGUUGCUAAUGGCAGAAGCUCUCUCAAGAUCAGCUGUUUCUCAAUGCCGAGCAUGUGGUUGGUUUCGUUGUGAAUGCCAAAAACAACAGCUGAUCGCGCGG
...((((((.....(((.....))))))))).......(((((((((((.....((((...))))((..((((((((.....))).)))))..)))))))))))))...... ( -35.20)
>DroSec_CAF1 36565 110 + 1
CAAAGCUUUAACGGUGCUACUGGCAGAAGCGCUCUUAAGAUCAGCUGUUUCUCAAUGCCGAGCAUGUGGUUGGUUUCGUUGUGAAUGCCAAAAACAACAGCUGAUCG--CGG
....((.((((.((((((.(.....).)))))).))))(((((((((((.....((((...))))((..((((((((.....))).)))))..))))))))))))))--).. ( -37.80)
>DroSim_CAF1 34045 110 + 1
CAAAGCUUUAACGGUGCUACUGGCAGAAGCGCUCUUAAGAUCAGCUGUUUCUUCAUGCCGAGCAUAUGGUUGGUUUCGUUGUGAAUGCCAAAAAGAACAGCUGAUCG--CAG
....((.((((.((((((.(.....).)))))).))))((((((((((((((..((((...))))..))((((((((.....))).)))))...)))))))))))))--).. ( -36.60)
>DroEre_CAF1 34898 102 + 1
UAAAGCUUUAACGGUGCUACUG-CC-AAGCUCUCUCAAGAUCAGCUGUUUCUCUAUGCCGAGCAUGCGGUUUG-UUCGGUGUGAAUGCCAAA-----CAGCUGAUCA--CAG
...(((((....(((......)-))-))))).......((((((((((((...(((((((((((.......))-)))))))))......)))-----))))))))).--... ( -36.80)
>DroYak_CAF1 35395 109 + 1
UAGAGCUUUAACGGUGCUGCUGGCC-AAGCCCUCUCAAGAUCAGCUGUUUCUCCAUGCCGAGCGUGCGGUGCACUGCGCUGUGAAUGGCAAACACAACAGCUGAUCG--CAG
....((......((.(((.......-.)))))......(((((((((((......(((((.((((((((....)))))).))...))))).....))))))))))))--).. ( -41.40)
>consensus
CAAAGCUUUAACGGUGCUACUGGCAGAAGCGCUCUCAAGAUCAGCUGUUUCUCAAUGCCGAGCAUGUGGUUGGUUUCGUUGUGAAUGCCAAAAACAACAGCUGAUCG__CAG
....(((((..(((.....)))...)))))........(((((((((((.....((((...))))..(((....(((.....))).)))......)))))))))))...... (-25.26 = -25.90 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:52 2006