Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,203,694 – 12,203,808 |
Length | 114 |
Max. P | 0.655236 |
Location | 12,203,694 – 12,203,808 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 74.55 |
Mean single sequence MFE | -19.03 |
Consensus MFE | -10.38 |
Energy contribution | -10.62 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.87 |
Structure conservation index | 0.55 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.655236 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12203694 114 - 22407834 CAGAAUUCUGAGCAAAAUGUUACUAAAAUAGGGGCAUUGCAAAUGCAAGAAGCCCAUACGAACGUAUUUUCUGAAGACAAAUUAACAAAUACA--UUAUCAUUAAACAUUAAGUAC (((....))).((..((((((..........((((.((((....))))...))))........((((((..(((.......)))..)))))).--.........))))))..)).. ( -20.40) >DroSec_CAF1 32622 98 - 1 CGGAACUCAGAAGAAAAUGGUACUA-AAUAGGGGCAUUGCAAAUGCAAGAAGCCCAU---------------GAAGACAAAUUACCAAAUAAA--UCCAUAUUAAACAUUUAGUAC .(((..((....))...(((((((.-...))((((.((((....))))...))))..---------------..........)))))......--))).((((((....)))))). ( -18.80) >DroSim_CAF1 30079 98 - 1 CAGAACUCAGAGGAAAAUGGUACUA-AAUAGGGGCAUUGCAAAUGCAAGAAGCCCAU---------------GAAGACAAAUUUUGAAAUAAA--UCCAUAUUAAACAUUUUGUAC ...........(.((((((...((.-...))((((.((((....))))...))))..---------------.....................--...........)))))).).. ( -14.80) >DroYak_CAF1 31429 115 - 1 CAGAACUCAUAGCAAAAUGCUUCUA-AAUAGGGGCAUUGCAAAUGCAAGAAGCCAAUACGAAAGUAUUUUAUGAAGGCAAUUUAUCAUUUACUAGAUAACAUAAAUAAAUAAAUAC ...........(((.(((((((((.-...))))))))).....))).....((((((((....))))).......)))...(((((........)))))................. ( -22.11) >consensus CAGAACUCAGAGCAAAAUGGUACUA_AAUAGGGGCAUUGCAAAUGCAAGAAGCCCAU_______________GAAGACAAAUUAUCAAAUAAA__UCAACAUUAAACAUUAAGUAC ...............................((((.((((....))))...))))............................................................. (-10.38 = -10.62 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:50 2006