Locus 4268

Sequence ID 2L_DroMel_CAF1
Location 12,198,911 – 12,199,003
Length 92
Max. P 0.979638
window6734

overview

Window 4

Location 12,198,911 – 12,199,003
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 81.45
Mean single sequence MFE -17.04
Consensus MFE -11.38
Energy contribution -11.82
Covariance contribution 0.44
Combinations/Pair 1.06
Mean z-score -2.64
Structure conservation index 0.67
SVM decision value 1.84
SVM RNA-class probability 0.979638
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12198911 92 - 22407834
AAGUGUUAUAAAUGUGGUGCAAUUUGUUCGAAACGGAUGAAGCCAGCGAAAUGCUGGUAAAUACAUAUUAAGCAAAAAGGAAAAAAAAAUAU
...((((...((((((......((..((((...))))..))((((((.....)))))).....)))))).)))).................. ( -18.20)
>DroSec_CAF1 27773 88 - 1
AAGUGUUAUAAAUGUGGUGCAAUUUGUUCGAAAUGGAGGUAGCCAGCGAAAUGCUGGUAAAUACAUAUUAAGCAAAAAGGAA----AAAUAU
..(..((((....))))..)..((((((..(.(((......((((((.....)))))).....))).)..))))))......----...... ( -19.00)
>DroEre_CAF1 26154 84 - 1
AAGUGUUAUAAAUGUGGUGCAAUUUGUACGAAAGGA---AAGCCAGCGAAAUGCUGGUAAAUACAUAUUAGGCAACAAG-AA----AAAUAU
..(((((...((((((((((.....)))).......---..((((((.....)))))).....)))))).(....)...-..----.))))) ( -18.80)
>DroYak_CAF1 26551 84 - 1
AAGUGUUAUAAAUGUGGUGCAAUUUGUACGAAAGGA---AAGCCAGCGAAAUGCUGGUAAAUACAUAUUAAGCAAGAAG-AA----AAAUAU
...((((...((((((((((.....)))).......---..((((((.....)))))).....)))))).)))).....-..----...... ( -18.30)
>DroAna_CAF1 26284 76 - 1
AAGUGUUAUAAAUGUGCUGCCAUUUGUACGAGGAGG---GAGCCAAGGAUAUAAUGAUAAACACAUAUUAGG--------AG----AAA-UU
..(((((.....((.(((.((.(((....)))..))---.)))))....(((....))))))))........--------..----...-.. ( -10.90)
>consensus
AAGUGUUAUAAAUGUGGUGCAAUUUGUACGAAAGGG___AAGCCAGCGAAAUGCUGGUAAAUACAUAUUAAGCAAAAAG_AA____AAAUAU
..(((((((((((........))))))..............((((((.....)))))).)))))............................ (-11.38 = -11.82 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:49 2006