Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,194,865 – 12,194,966 |
Length | 101 |
Max. P | 0.751350 |
Location | 12,194,865 – 12,194,966 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 72.03 |
Mean single sequence MFE | -19.89 |
Consensus MFE | -12.82 |
Energy contribution | -13.30 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.10 |
Mean z-score | -1.45 |
Structure conservation index | 0.64 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.751350 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12194865 101 - 22407834 UGAAAAGCAGCGACAAUUGCAAACAUCUCGUCUGUUUUGCCGUUGCAGUAGUUUUUU-UCCCGCACACUAGGAAAAAAAAUAGGGAAACUUUACAAAAUUCA .(((..((((((.(((..(((.((.....)).))).))).)))))).(((.((((((-(((.........)))))))))..(((....))))))....))). ( -24.60) >DroSec_CAF1 23785 100 - 1 UGAAAAGCAGCGACAAUUGCAAACAUCUUGUCUGUUUCGCCGUUGCAGUAGUUUUUCCUUUACCACACUAGAAAAAAAAAUGGGGAUACUUUACA--AUUCA .(((..((((((.(....(((.((.....)).)))...).)))))).((((....(((((.....................)))))....)))).--.))). ( -17.60) >DroSim_CAF1 21681 101 - 1 UGAAAAGCAGCGACAAUUGCAAACAUCUCGUCUGUUUCGCCGUUGUAGUAGUUUUUCAUUUAGCACACUAGGAAA-AAAUUGGGGAAACUUUACAAAAUUCA ((((((((.((.(((((.(((((((.......))))).)).))))).)).))))))))............(((..-.....(((....))).......))). ( -21.94) >DroEre_CAF1 21813 78 - 1 UGAAAAGCAGCGACAAUUGCAAACAUCUCGUCUGCUUCGCUGUUGCAGCAGUUUUUCUGCCGGCUAAAUUCAAAA-CGA----------------------- ((((.((((((((.....(((.((.....)).))).))))))))((.((((.....))))..))....))))...-...----------------------- ( -22.10) >DroYak_CAF1 22394 81 - 1 UGAAAAGCAGCGACAAUUGCAAACAU-UCGUCUGCUUCACAGUUGCAGUAGUUCUUCAUCCAGCUAAAUUUAAAA-CGA-------------------UCAA (((...(((((.......(((.((..-..)).)))......)))))..(((((........))))).........-...-------------------))). ( -13.22) >consensus UGAAAAGCAGCGACAAUUGCAAACAUCUCGUCUGUUUCGCCGUUGCAGUAGUUUUUCAUCCAGCACACUAGAAAA_AAA_U_GGGA_ACUUUACA__AUUCA .(((((((.((..((((.(((((((.......))))).)).))))..)).)))))))............................................. (-12.82 = -13.30 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:48 2006