Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,192,206 – 12,192,297 |
Length | 91 |
Max. P | 0.551773 |
Location | 12,192,206 – 12,192,297 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 81.73 |
Mean single sequence MFE | -26.67 |
Consensus MFE | -18.40 |
Energy contribution | -18.02 |
Covariance contribution | -0.39 |
Combinations/Pair | 1.25 |
Mean z-score | -1.40 |
Structure conservation index | 0.69 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.551773 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12192206 91 - 22407834 ---AUGUGUGGGUUCGGGAGCAAGU----UUAGUUGGCAGCAGUGUCGUAUGUGUUGCACACUAGUUGAUGAUGUUGCUGACGUAGCCAGGAAAGGAU ---.......((((((..(((((..----(((.....(((((((((.(((.....)))))))).)))).)))..)))))..)).)))).......... ( -25.30) >DroPse_CAF1 32455 96 - 1 C--AUGUAUUUAUGUACGAGAAUGUCGGUCGCUUUUGCAACAGUGUCAUAUGUGUUGCACACCAGUUGAUGAUGUUGCUGACGCUGCCAGGACACGCC .--.(((((....))))).(..(((((((.((.((.((((((..((((...(((.....)))....))))..)))))).)).)).)))..))))..). ( -26.40) >DroSec_CAF1 20734 91 - 1 ---AUGUGUGGGUUCGGGAGAAAGU----UUAGUUGGCAGCAGUGUCGUAUGUGUUGCACACUAGUUGAUGAUGUUGCUGACGUAGCCAGGAAAGGAU ---...(.(((.(((....)))...----...((..((((((..((((...(((.....)))....))))..))))))..))....))).)....... ( -25.40) >DroSim_CAF1 19022 91 - 1 ---AUGUGUGGGUUCGGGAGAAAGU----UUAGUUGGCAGCAGUGUCGUAUGUGUUGCACACUAGUUGAUGAUGUUGCUGACGUAGCCAGGAAAGGAU ---...(.(((.(((....)))...----...((..((((((..((((...(((.....)))....))))..))))))..))....))).)....... ( -25.40) >DroYak_CAF1 19669 94 - 1 UAUAUGUGUGGGUUCGGGAGAAAGU----UUAGUUGGCAGCAGCGUCGUAUGUGUUGCACACUAGUUGACGAUGUUGCUGACGUAGCCAGGAGAGGAU ......(.(((.(((....)))...----...((..((((((.(((((...(((.....)))....))))).))))))..))....))).)....... ( -29.30) >DroPer_CAF1 38308 96 - 1 A--AUGUAUUUAUGUACGAGUAUGUCGGUCGCUUUUGCAACAGUGUCAUAUGUGUUGCACACCAGUUGAUGAUGUUGCUGACGCUGCCAGGACACGCC .--.(((((....))))).(..(((((((.((.((.((((((..((((...(((.....)))....))))..)))))).)).)).)))..))))..). ( -28.20) >consensus ___AUGUGUGGGUUCGGGAGAAAGU____UUAGUUGGCAGCAGUGUCGUAUGUGUUGCACACUAGUUGAUGAUGUUGCUGACGUAGCCAGGAAAGGAU ................................((..((((((.(((((...(((.....)))....))))).))))))..))................ (-18.40 = -18.02 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:45 2006