Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,191,964 – 12,192,060 |
Length | 96 |
Max. P | 0.500000 |
Location | 12,191,964 – 12,192,060 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 84.82 |
Mean single sequence MFE | -19.24 |
Consensus MFE | -14.06 |
Energy contribution | -14.46 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.52 |
Structure conservation index | 0.73 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12191964 96 - 22407834 CC-ACCGAUUUCC-------CCUCGUGCCACACCCACCAAUCUUAUUUUCCAGCACGACGUCAUCGUUGUGUAUUAAGCGUUAUUUUCGCUUUGCUACUUGCCG ..-..........-------....((((........................((((((((....))))))))...(((((.......))))).)).))...... ( -16.30) >DroSec_CAF1 20485 103 - 1 CC-ACUGAUUUUCCACCCCUCCUUGUACCACUACGACCAACCUUAUUUUCCCGCACGACGUCAUCGUUGUGUAUUAAGCGUUAUUUUCGCUUUGCUACUUGCCG ..-...................(((((....)))))................((((((((....))))))))...(((((.......))))).((.....)).. ( -16.20) >DroSim_CAF1 18773 103 - 1 CC-ACUGAUUUUCCACCCCUCCUCGUACCACUACGACCAACCUUAUUUUCCCGCACGACGUCAUCGUUGUGUAUUAAGCGUUAUUUUCGCUCUGCUACUUGCCG ..-...................(((((....)))))................((((((((....))))))))....((((.......))))..((.....)).. ( -17.50) >DroEre_CAF1 18735 102 - 1 CUCCC-GGCUCCCGGCCCC-CCGGCUGCCACUCCCACCCAGCUUAUUUUCCCGCACGACGUCAUCGUUGUGUACUAAGCGUUAUUUUCGCCUUGCUACUUGCCG .....-(((..((((....-))))..)))..........(((..........((((((((....)))))))).....(((.......)))...)))........ ( -28.00) >DroYak_CAF1 19422 102 - 1 CCCACUGAUUUUCCACCCC-CCAGCUGCCAGUCCCACCAACCUCAU-UUCCCGCACGACGUCAUCGUUGUGUAUUAAGCGUUAUUUUCGCUUUGCUACUUGCCG ...................-......((.(((..((..........-.....((((((((....))))))))...(((((.......)))))))..))).)).. ( -18.20) >consensus CC_ACUGAUUUUCCACCCC_CCUCGUGCCACUCCCACCAACCUUAUUUUCCCGCACGACGUCAUCGUUGUGUAUUAAGCGUUAUUUUCGCUUUGCUACUUGCCG ....................................................((((((((....))))))))...(((((.......))))).((.....)).. (-14.06 = -14.46 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:44 2006