Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,191,478 – 12,191,571 |
Length | 93 |
Max. P | 0.942431 |
Location | 12,191,478 – 12,191,571 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 79.18 |
Mean single sequence MFE | -27.19 |
Consensus MFE | -19.41 |
Energy contribution | -19.80 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.24 |
Mean z-score | -2.18 |
Structure conservation index | 0.71 |
SVM decision value | 1.33 |
SVM RNA-class probability | 0.942431 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12191478 93 + 22407834 CA------CAUCAUCCAACAGAGUUCUUCACACUUAGUGUGGGUAACCAGGCUUGAAGUGAAGUUCAAUAGAAUUUGAGCCAUAGGCUUAGACUGUUUU ..------........(((((.(..((((((....(((.(((....))).)))....))))))..).......((((((((...))))))))))))).. ( -28.80) >DroSec_CAF1 19983 99 + 1 CACUGACUCAUCAUCCAACAGAGUUCUUCACACUUAGUGUGGGUAACCUGGCUUGAAGUGAGGUUCAAUAGAGUUUGAGCCAUAGGCUUAGGCUGUUUU ......(((((.......(((.(((.(((((((...))))))).)))))).......))))).........((((((((((...))))))))))..... ( -29.04) >DroSim_CAF1 18250 99 + 1 CACUGACUCAUCAUCCAACAGACUUCUUCACACUUAGUGUGGGUAACCAGGCUUGAAGUGAAGUUCAAUAGAGUUUGAGCCAUAGGCUUAGACUGUUUU ................(((.((...((((((....(((.(((....))).)))....)))))).)).....((((((((((...))))))))))))).. ( -28.50) >DroEre_CAF1 18294 99 + 1 CCCAGAUUCAUCACAUAACAGAGGUCUUCACACUUCGUGUGGGUAACCAAGCUUGAAGUGAAGUUCAAUAGAGUUUGAGCCCUAGGCUUAUAUUGUUUU ................(((((((((((...(((((((..(((....)))....)))))))..((((((......))))))...))))))...))))).. ( -22.90) >DroYak_CAF1 18912 99 + 1 UCUCGACUCAUCAUUCAACAGAGUUAUUCACACUUGGUGUGGGUAACCAAGCUUGAAGUGAAGUUCAAUAGAGUUUGAGCCCUAGGCUUAGACUGUAUU ....(((((((..((((((...(((((((((((...)))))))))))...).)))))))).)))).((((.((((((((((...)))))))))).)))) ( -32.30) >DroAna_CAF1 19086 73 + 1 ---------------GCAC-----------CACUAAGUGUGGGCAACCAAGCUCGAAGUGAAGUUCAAUAGAGAUUGAGUUUCAGGCUUAGGCUGUUUU ---------------((.(-----------(((.....))))))..(((((((.....((((..(((((....)))))..))))))))).))....... ( -21.60) >consensus CAC_GACUCAUCAUCCAACAGAGUUCUUCACACUUAGUGUGGGUAACCAAGCUUGAAGUGAAGUUCAAUAGAGUUUGAGCCAUAGGCUUAGACUGUUUU ..............................((((((((.(((....))).)))..)))))...........((((((((((...))))))))))..... (-19.41 = -19.80 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:43 2006