Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,183,482 – 12,183,596 |
Length | 114 |
Max. P | 0.815251 |
Location | 12,183,482 – 12,183,596 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 82.39 |
Mean single sequence MFE | -21.95 |
Consensus MFE | -15.40 |
Energy contribution | -15.40 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.36 |
Structure conservation index | 0.70 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.815251 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12183482 114 + 22407834 ACACGGAUAUAAAUUUCAAUUUCCGACACUCUAAGUGGCG-GCCAAAUGAAAUAACAUUUUCAUUUAACCUGCAUUCGAUUCCCAAGCACCAA---GAGAAUCCGACAGACAGAGAAG ...((((.((........)).))))...((((...(((((-(..((((((((......))))))))...))))..(((((((.(.........---).)))).)))))...))))... ( -21.60) >DroVir_CAF1 12494 90 + 1 ACACGGAUAUAAAUUUCAAUUUCCGACACUCUAAGUGGCGGGGCAAAUGAAAUAACAUUUUCAUUUAACCUGCAUUCGAUUUC----------------------ACACACA------ ...((((.((........)).)))).(((.....)))(((((..((((((((......))))))))..)))))..........----------------------.......------ ( -23.10) >DroPse_CAF1 21242 95 + 1 ACACGGAUAUAAAUUUCAAUUUCCGACACUCUAAGUGGCG-GCCAAAUGAAAUAACAUUUUCAUUUAACCUGCAUUCGAUUCC----------------------ACACACAGAAAUG ...((((.((........)).))))....(((..((((((-(..((((((((......))))))))...))))....(....)----------------------.)))..))).... ( -17.00) >DroMoj_CAF1 12558 97 + 1 ACACGGAUAUAAAUUUCAAUUUCCGACACUCUAAGUGGCGGGGCAAAUGAAAUAACAUUUUCAUUUAACCUGCAUUCGAUUUCAG-C---CAA---C--------ACACACA------ ...((((.((........)).)))).(((.....)))(((((..((((((((......))))))))..)))))............-.---...---.--------.......------ ( -23.10) >DroAna_CAF1 8986 117 + 1 ACACGGAUAUAAAUUUCAAUUUCCGACACUCUAAGUGGCG-GCCAAAUGAAAUAACAUUUUCAUUUAACCUGCAUUCGAUUCUCGAGCACCGAGGAGGGAAAGCGUCAGACAGAAGGG ...((((.((........)).)))).(..(((...(((((-(..((((((((......))))))))..)).((.(((..((((((.....))))))..))).))))))...)))..). ( -29.90) >DroPer_CAF1 20363 95 + 1 ACACGGAUAUAAAUUUCAAUUUCCGACACUCUAAGUGGCG-GCCAAAUGAAAUAACAUUUUCAUUUAACCUGCAUUCGAUUCC----------------------ACACACAGAAAAG ...((((.((........)).))))....(((..((((((-(..((((((((......))))))))...))))....(....)----------------------.)))..))).... ( -17.00) >consensus ACACGGAUAUAAAUUUCAAUUUCCGACACUCUAAGUGGCG_GCCAAAUGAAAUAACAUUUUCAUUUAACCUGCAUUCGAUUCC______________________ACACACAGAAA_G ...((((.((........)).)))).(((.....)))(((.(..((((((((......))))))))..).)))............................................. (-15.40 = -15.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:42 2006