| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,179,519 – 12,179,627 |
| Length | 108 |
| Max. P | 0.816433 |
| Location | 12,179,519 – 12,179,627 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 90.06 |
| Mean single sequence MFE | -27.47 |
| Consensus MFE | -22.70 |
| Energy contribution | -24.48 |
| Covariance contribution | 1.78 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.816433 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12179519 108 - 22407834 AACAUUUGCAAUUAUGUGGCAAAUUGGCGGCAUGGCAAUGCAAUCGAAUGCAAAAUAUUUGAACAAUGAACUGCGAAAACCCGCCGAGAGGCCGGAAAUUGAAAAUGU .((((((.(((((.(.((((...(((((((..(.(((...((.(((((((.....)))))))....))...))).)....)))))))...)))).)))))).)))))) ( -32.30) >DroSec_CAF1 5788 108 - 1 AGCUUUUGCAAUUAUGUGGCAAAUUGGCGGCAUGACAAUGCAAUCGAAUGCAAAAUAUUUGAACAAUGAACUGCGAAAACUCGCCGAGAGGCCGGAAAUUGAAAAUGU .((((((.(((((.(.((((...((((((((((....))))..(((((((.....)))))))...................))))))...)))).)))))))))).)) ( -27.90) >DroSim_CAF1 5926 108 - 1 AACAUUUGCAAUUAUGUGGCAAAUUGGCGGCAUGACAAUGCAAUCGAAUGCAAAAUAUUUGAACAAUGAACUGCGAAAACUCGCCGAGAGGCCGGAAAUUGAAAAUGU .((((((.(((((.(.((((...((((((((((....))))..(((((((.....)))))))...................))))))...)))).)))))).)))))) ( -31.90) >DroEre_CAF1 5593 108 - 1 ACCAUUUGCAAUUAUGUGGCAAAUUGGCGGCAUGACAAUGCAAUUGAAUGCAAAAUAUUUGAACAAUAAACGGCGAAAACCCGCCGAGAGGCCGGAAAUUGAAAUUGU ((.((((.(((((.(.((((...((((((((((....)))).......(((....((((.....))))....)))......))))))...)))).)))))))))).)) ( -26.40) >DroYak_CAF1 6233 108 - 1 GCAAUUUGCAAUUAUGUGGCAAAUUGGCGGCUUGACAAUGCAAUUGAAUGCAAAAUAUUUGAACAAUGAACGGCGAAAACCCGCCCAGAGGCCGGAAAUUGAAAAUGU .((((((((.........)))))))).((((((.....((((......))))...................((((......))))...)))))).............. ( -26.60) >DroAna_CAF1 5363 97 - 1 AGCAUUUGUAAUUAUGUGGCAAAUUGGCGGCUUGUCAAUGCAAUUGCAUGCAAAAUAUUCGAACAAUGAACU----AAAC-------AAGGCCGGAAAUUGAAAAUGC .((((((.(((((.(.((((..((((((.....))))))(((......))).....................----....-------...)))).)))))).)))))) ( -19.70) >consensus AACAUUUGCAAUUAUGUGGCAAAUUGGCGGCAUGACAAUGCAAUCGAAUGCAAAAUAUUUGAACAAUGAACUGCGAAAACCCGCCGAGAGGCCGGAAAUUGAAAAUGU .((((((.(((((.(.((((...((((((((((....))))..(((((((.....)))))))...................))))))...)))).)))))).)))))) (-22.70 = -24.48 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:41 2006