Locus 4258

Sequence ID 2L_DroMel_CAF1
Location 12,168,747 – 12,168,845
Length 98
Max. P 0.507955
window6722

overview

Window 2

Location 12,168,747 – 12,168,845
Length 98
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 80.00
Mean single sequence MFE -23.81
Consensus MFE -14.66
Energy contribution -14.88
Covariance contribution 0.22
Combinations/Pair 1.12
Mean z-score -1.46
Structure conservation index 0.62
SVM decision value -0.05
SVM RNA-class probability 0.507955
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12168747 98 - 22407834
ACCCCUUCUCCGUAUCCGCUAGGUGGAAAUUAAAUUCAAUGGCAUCCUCCACCAGGGUGGUUCUGCCCUGCCCCCCAUCGAUUUCUAUUGAGCAAUCU
.................(((..(((((((((........(((......))).((((((......)))))).........)))))))))..)))..... ( -23.90)
>DroPse_CAF1 102679 98 - 1
UCUGCAUCUCUGGCUCUGUUUGGUAGAAACUAAAAGCAAUUGCAUCCUCUACGACCGUUGCUGUUCCAUGCUGGUCAACAACUUCUAUUGAGCAAUCU
...((.......))..((((..((((((.......((....)).........(((((..((........)))))))......))))))..)))).... ( -21.80)
>DroSec_CAF1 53872 98 - 1
UCCCCUCCUCCGUAUCCGCUAGGUGGAAAUUAAACUCAAUGGCAUCGUCCACCAGGGUGGUUCUGCCCUGCCCCCUAUCGAUUUCUAUUGAGCAAUCU
.....(((.((..........)).))).......((((((((.((((.....((((((......))))))........))))..))))))))...... ( -25.92)
>DroSim_CAF1 51947 98 - 1
UCCCCUCCUCCGUAUCCGCUAGGUGGAAAUUAAACUCAAUGGCAUCGUCCACCAGGGUGGUUCUGCCCUGCCCCCUAUCGAUUUCUAUUGAGCAAUCU
.....(((.((..........)).))).......((((((((.((((.....((((((......))))))........))))..))))))))...... ( -25.92)
>DroEre_CAF1 49931 98 - 1
UACCCUCCUCCGAAUCCGCUAGGUGGAAAUUAAACUCAAUGGCAUCCUCCACCGGCGUGGUGGUGCCCUGCCCCCCAUCGACUUCUAUUGAGCAAUCU
...((.(((.((....))..))).))........((((((((((.((.((((....)))).))))))............(....).))))))...... ( -23.50)
>DroPer_CAF1 102233 98 - 1
UCUGCAUCUCUGGCUCUGUUUGGUAGAAACUAAAAGCAAUUGCAUCCUCUACGACCGUUGCUGUUCCAUGCUGGUCAACAACUUCUAUUGAGCAAUCU
...((.......))..((((..((((((.......((....)).........(((((..((........)))))))......))))))..)))).... ( -21.80)
>consensus
UCCCCUCCUCCGUAUCCGCUAGGUGGAAAUUAAACUCAAUGGCAUCCUCCACCAGCGUGGUUCUGCCCUGCCCCCCAUCGACUUCUAUUGAGCAAUCU
.................(((..((((((............((((....((((....))))........))))..........))))))..)))..... (-14.66 = -14.88 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:37 2006