Locus 4255

Sequence ID 2L_DroMel_CAF1
Location 12,154,238 – 12,154,331
Length 93
Max. P 0.914618
window6718

overview

Window 8

Location 12,154,238 – 12,154,331
Length 93
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 76.04
Mean single sequence MFE -22.34
Consensus MFE -10.02
Energy contribution -10.97
Covariance contribution 0.95
Combinations/Pair 1.29
Mean z-score -2.35
Structure conservation index 0.45
SVM decision value 1.10
SVM RNA-class probability 0.914618
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12154238 93 - 22407834
AGCCACUCAUUCCCGCUCUUGAGCAACACUUAUUCGCAUUAUUUCAAUUGCAUUCCUAUGUAAGUGCAGCUUAAUUGGGGUUAGCACUAGGCA
.(((.......(((.(..((((((..(((((((..(((..........)))........)))))))..))))))..)))).........))). ( -22.69)
>DroSec_CAF1 39438 75 - 1
AGCCCCUCAUUCCCGCU------------------CCAUUAUUUCAAUUGCACUACUGUGUAAUUGCAGCUUAAUUGGGGUUAGUACUAGGCA
.(((..........(((------------------((((((...(((((((((....))))))))).....))).))))))........))). ( -20.67)
>DroSim_CAF1 36159 93 - 1
AGCCCCUCAUUCCCGCUCUUGGGCAACACUUAUUCCCAUUAUUUCAAUUGCACUCCUGUGUAAUUGCAGCUUAAUUGGGGUUAGCACUAGGCA
.(((..........(((....)))....((...((((((((...(((((((((....))))))))).....))).)))))..)).....))). ( -24.90)
>DroEre_CAF1 35232 92 - 1
AGCCCCUCAUUUCCACUCUUGGGCAACACUUAUUCUCAUUACUUCAAUUGCACUCCUGUGUAAUUGCGGCUUAAAUGG-GUUUGCACUAGGCA
.(((........(((....)))((((.(((((((.......((.(((((((((....))))))))).))....)))))-))))))....))). ( -24.80)
>DroYak_CAF1 29975 92 - 1
AGCCCCUCAUUCCCACUCUUGGCCAGCACUUAUUCCCAUUAUUUCAAUUGCACUCCUGUGUAAUUGCGGCUCAAAUGG-GUUAGCACUAGGCA
.(((.......((((...((((((......((.......))...(((((((((....))))))))).))).))).)))-).........))). ( -22.99)
>DroPer_CAF1 86589 84 - 1
---------CUCCCCCGCUUGUGCCGCACUUGUGCCCAUUAUUUCAAUGGCACUUCAACGUAAUGACGGCUUAAAUAAGGCUUACACUGUGCA
---------.......((....)).((((..(((((.(((.....))))))))......(((.....(((((.....))))))))...)))). ( -18.00)
>consensus
AGCCCCUCAUUCCCGCUCUUGGGCAACACUUAUUCCCAUUAUUUCAAUUGCACUCCUGUGUAAUUGCAGCUUAAAUGGGGUUAGCACUAGGCA
.(((........................................(((((((((....))))))))).(((((.....))))).......))). (-10.02 = -10.97 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:34 2006