Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,150,714 – 12,150,817 |
Length | 103 |
Max. P | 0.779517 |
Location | 12,150,714 – 12,150,817 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 78.58 |
Mean single sequence MFE | -27.52 |
Consensus MFE | -16.59 |
Energy contribution | -16.20 |
Covariance contribution | -0.39 |
Combinations/Pair | 1.17 |
Mean z-score | -1.78 |
Structure conservation index | 0.60 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.779517 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12150714 103 - 22407834 UUUUUUUUUGGGCUG------GAGAAAAACUCCUGAGGCUUGCAUUAAUUUAAUGAGGUUCCUUCUGCCUUUGAUUUGCCUGUGGUU-------AAU-UU-UUUU-GGCCAUCACAUCG ..........(((..------((((((....((..((((...(((((...)))))((((.......)))).......))))..))..-------..)-))-))).-.)))......... ( -25.10) >DroPse_CAF1 80303 102 - 1 --------UGGGCCGUGAGGAGGGAAAAUCUCCUGAGGCCUGCAUUAAUUUAAUGAGUUUCCUUCUGCCUCUGAUUUGCCUGCGGUU-------UUCGUUUUUUU-GGCCAUUUCAUU- --------..(((((.((((((.(((((((((..(((((.......(((((...))))).......))))).))...(....)))))-------))).)))))))-))))........- ( -26.14) >DroSec_CAF1 35981 99 - 1 -----UUUUUGGCUG------GAGAAAAACUCCUGAGGCUUGCAUUAAUUUAAUGAGGUUCCUUCUGCCUUUGAUUUGCCUGUGGUU-------AAU-UUUUUUU-GGCCAUGCCAUCG -----....((((.(------(((.....))))..((((...(((((...)))))((((.......)))).......))))((((((-------((.-.....))-))))))))))... ( -26.90) >DroYak_CAF1 26434 102 - 1 --UUUUUUUGGGCUG------GGGAAAAACUCCUGAGGCUUGCAUUAAUUUAAUGAGGUUUCUGCUGCCUUUGAUUUGCCUGUGGUU-------AAU-UUUUUUC-GGCCAUCCCAUCA --........(((((------..(((((...((..((((...(((((...)))))((((.......)))).......))))..))..-------..)-))))..)-))))......... ( -27.20) >DroAna_CAF1 30587 95 - 1 -------UAGGGGAG------GAGG-AAACUCCUGAGGCUUGCAUUAAUUUAAUGAGGUUCCUUCUGCCUUUGAUUUGCCUGCGGCU-------CCU-UUUUUUCAGACCAUCUCAU-- -------.(((((((------(((.-...)))))...((..(((..((((....(((((.......))))).)))))))..))..))-------)))-...................-- ( -26.20) >DroPer_CAF1 80451 109 - 1 --------UGGGCCGUGAGGAGGGAAAAUCUCCUGAGGCCUGCAUUAAUUUAAUGAGGUUCCUUCUGCCUCUGAUUUGCCUGCGGUUUUCGGUUUUCGUUUUUUU-GGCCAUUUCAUU- --------..(((((.((((((.(((((((....((((((.(((..((((....(((((.......))))).))))....))))))))).))))))).)))))))-))))........- ( -33.60) >consensus _______UUGGGCUG______GAGAAAAACUCCUGAGGCUUGCAUUAAUUUAAUGAGGUUCCUUCUGCCUUUGAUUUGCCUGCGGUU_______AAU_UUUUUUU_GGCCAUCUCAUC_ ..........((((.......(((.....)))(((((((.......((((....(((((.......))))).)))).)))).))).....................))))......... (-16.59 = -16.20 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:30 2006