Locus 4250

Sequence ID 2L_DroMel_CAF1
Location 12,148,722 – 12,148,816
Length 94
Max. P 0.862190
window6710

overview

Window 0

Location 12,148,722 – 12,148,816
Length 94
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 85.19
Mean single sequence MFE -22.25
Consensus MFE -15.70
Energy contribution -17.10
Covariance contribution 1.40
Combinations/Pair 1.00
Mean z-score -2.22
Structure conservation index 0.71
SVM decision value 0.83
SVM RNA-class probability 0.862190
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12148722 94 + 22407834
AAUUCUGCGCUAUUCCAGCUGCUCCAACUAAGUCUUUUUUUAGUGGGGCUCCUCGUGGGGUAGCCGACUAUUACUAUUUUUUUUUCGCAUUCCU-
.....((((((((((((...((((((.(((((......)))))))))))......))))))))).((.................))))).....- ( -24.83)
>DroSec_CAF1 34101 85 + 1
-------CGCUAUUCCAGCUGCUCCAACUAAGUCUUU-UUUAGUGGGGCUCCUCGUGGGGUAGCCGACUAUUACUU-UUUUUUUUCGCAUUCCU-
-------.(((((((((...((((((.(((((.....-)))))))))))......)))))))))............-.................- ( -24.00)
>DroSim_CAF1 30709 83 + 1
-------CGCUAUUCCAGCUCCUCCAACUAAGUCUUU-UUUAGUGGUGCUCCUCGUGGGGUAGCCGACUAUUACUU-UU--UUUUCGCAUUCCU-
-------.(((((((((((....(((.(((((.....-)))))))).))......)))))))))............-..--.............- ( -17.50)
>DroEre_CAF1 29776 89 + 1
AACUCUGUGCUAUUCCAGCUGCUCGUACUAAGUCUU--UUUAGUGGGGCUCCUCUUGGGGCAACCGACUAUUACUU-UU---UGUCGCAUUCCUU
......((((.......(((((((.(((((((....--))))))))))).((....)))))....(((........-..---.)))))))..... ( -20.20)
>DroYak_CAF1 24444 88 + 1
AAUUCUGUGCUAUUCCAGCUGCGCGUACUAAGUCUUU-UUUAGUGGGGCUCCUCUUGGGGUAGCCGACUAUUACUU-UU---UG-CGCAUUCCU-
........(((.....)))(((((((((((((.....-))))))).(((((((....))).))))...........-..---))-)))).....- ( -24.70)
>consensus
AA_UCUGCGCUAUUCCAGCUGCUCCAACUAAGUCUUU_UUUAGUGGGGCUCCUCGUGGGGUAGCCGACUAUUACUU_UU__UUUUCGCAUUCCU_
........(((((((((...(((((.((((((......)))))))))))......)))))))))............................... (-15.70 = -17.10 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:26 2006