Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,130,738 – 12,130,835 |
Length | 97 |
Max. P | 0.815749 |
Location | 12,130,738 – 12,130,835 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 79.11 |
Mean single sequence MFE | -23.80 |
Consensus MFE | -17.72 |
Energy contribution | -17.83 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.32 |
Mean z-score | -1.45 |
Structure conservation index | 0.74 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.815749 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12130738 97 - 22407834 CCCU----------------------ACUUUGUCGAACAGAACUUUUCGCAAUUGUCGCACCGCUUUGCCCGCAUCGCCUCCCUGCUGAUAUUGUUACUCAGCGAUGUGGGCUUUACAA ....----------------------...(((.((((........)))))))...............(((((((((((......((.......))......)))))))))))....... ( -25.60) >DroSim_CAF1 12089 97 - 1 CCCU----------------------ACUUUGUCGAACAGAACUUUUCGCAAUUGUCGCACCGCUUUGCCCGCAUCGCCUCCCUGCUGAUAUUGUUCCUCAGCGAUGUGGGCUUCACAA ....----------------------...(((.((((........)))))))...............(((((((((((......((.......))......)))))))))))....... ( -25.60) >DroEre_CAF1 11439 97 - 1 CCCU----------------------ACUUUGUCGAACAGAACUUUUCGCAAUUGUCGCAGCGCUUCGCCCGCGUCGCCUCCCUCUUGAUUCUGCUCCUCAGCGAUGUGGGCUUCACAA ....----------------------...((((.(((..........(((..........)))....(((((((((((.......................)))))))))))))))))) ( -23.30) >DroYak_CAF1 5533 97 - 1 CCCU----------------------ACUUUGUCGAACAGAACUUUUCGCAAUUGUCGCACCGCUUUGCCCGCAUCGCCGCCCUCCUCAUUUUGCUCCUCAGCGAUGUGGGCUUUACAA ....----------------------...(((.((((........)))))))...............(((((((((((.......................)))))))))))....... ( -23.30) >DroAna_CAF1 11136 97 - 1 CUCU----------------------UUUUUGUCGAUUAGAACUUUUCUCAGUUGUCUCAUCGAUUCGCCCGCAUAGCCGCCCUGCUGAUUCUGUUCCUCAGUGACGUGGGCUUCACCA ....----------------------.....((((((.((((((......)))..))).))))))..((((((.((((......))))...(((.....)))....))))))....... ( -23.60) >DroPer_CAF1 45388 119 - 1 CCCCACCACCACCCCCCCCCCCUCCCUUUUGGUUGAAUAGAACUUCCCCCAUUUGUCGCACCGCUUUGCCCGCAUCGCCGCUCUGCUGAUCUUGUUCCUCAGCGACGUGGCCUUCACCG ..............................(((.(((................(((.(((......)))..)))..(((((..((((((.........))))))..))))).)))))). ( -21.40) >consensus CCCU______________________ACUUUGUCGAACAGAACUUUUCGCAAUUGUCGCACCGCUUUGCCCGCAUCGCCGCCCUGCUGAUUUUGUUCCUCAGCGAUGUGGGCUUCACAA .............................((((.(((....................((...))...(((((((((((......((.......))......)))))))))))))))))) (-17.72 = -17.83 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:24 2006