Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,126,969 – 12,127,065 |
Length | 96 |
Max. P | 0.579953 |
Location | 12,126,969 – 12,127,065 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 82.22 |
Mean single sequence MFE | -39.15 |
Consensus MFE | -23.59 |
Energy contribution | -24.28 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.21 |
Mean z-score | -2.05 |
Structure conservation index | 0.60 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.579953 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12126969 96 - 22407834 CGGAGGAGGCAUUACUUCUGUGGCUGGUGUUGGCCAAAUUCCAGCAUUUGCGAUACCAAUUUGUUGGGCCUCCGCCGGCAGUUCACCCACAGCCAU .((.((((((........(((.((..(((((((.......)))))))..)).)))((((....)))))))))).))(((.((......)).))).. ( -37.90) >DroPse_CAF1 40782 96 - 1 CGGGGGAGGGUUCAUUUCCUGGCUCGGUGUUGGCCAAAUACCCGCAUUGGCCAGGCCAAUGUGCUGGGCCUCGGCUGGCAGCUCCCCCACGGCAAU .((((((((((.((((.((((((.((((((.((.......)).))))))))))))..)))).)))..(((......)))..)))))))........ ( -45.80) >DroSec_CAF1 7309 96 - 1 UGGAGGGGGCAUUACUUCUGUGGCUGGUGUUGGCCAAAUUCCAGCAUUUGCGAUACCAAUUUGUUGGGCUUCCGCCGGCAGUUCACCCACUGCCAU .((.((((((........(((.((..(((((((.......)))))))..)).)))((((....)))))))))).))((((((......)))))).. ( -39.20) >DroEre_CAF1 7536 96 - 1 UGGAGGGGGCAUUACUUCCGUAGCUGGUGUUGGCCAUAUUCCAGCAUUCGCGAUGCCAAUUUGUUGGGCCUCCGCCGGCAGUUCACCCACAGCCAU .((.((((((........(((.((..(((((((.......)))))))..)).)))((((....)))))))))).))(((.((......)).))).. ( -35.20) >DroYak_CAF1 1545 96 - 1 AGGAGGGGGCAUUACUUCUGUGGAUGGUGUUGGCCAAAUUCCAGCAUUUGCGAUACCAAUUUGCUGGGCCUCCGCCGGCAGUUCGCCCACAGCCAU .((..(((((...(((((.(((((((((....))))...(((((((.(((......)))..)))))))..))))).)).)))..)))).)..)).. ( -34.70) >DroPer_CAF1 40859 96 - 1 GGGGGGUGGAUUCAUUUCCUGGCUCGGUGUUGGCCAAAUACCCGCAUUGGCCAGGCCAAUGUGCUGGGCCUCGGCUGGCAGCUCCCCCACCGCAAU ((((((.(((......)))......(.(((..(((.....(((((((((((...)))))))))..)).....)))..))).)))))))........ ( -42.10) >consensus CGGAGGGGGCAUUACUUCCGUGGCUGGUGUUGGCCAAAUUCCAGCAUUUGCGAUACCAAUUUGCUGGGCCUCCGCCGGCAGUUCACCCACAGCCAU .((.((((((........(((.((.((((((((.......)))))))).)).)))(((......))))))))).))(((.(........).))).. (-23.59 = -24.28 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:23 2006