Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,124,585 – 12,124,677 |
Length | 92 |
Max. P | 0.672312 |
Location | 12,124,585 – 12,124,677 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 83.99 |
Mean single sequence MFE | -20.07 |
Consensus MFE | -11.86 |
Energy contribution | -12.80 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.11 |
Mean z-score | -2.22 |
Structure conservation index | 0.59 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.672312 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12124585 92 - 22407834 CGUUACUUGUCGCCAGUGCCAAAGUUCUGCCACACUUUUAAUGAACCAUAUAUAUGUGUAUAUAUAUAUAAAUCCACAGACGGGCGGCAAAA ......((((((((.(((.((......)).)))...............(((((((((....)))))))))............)))))))).. ( -21.40) >DroSec_CAF1 4941 87 - 1 CUUUACUUGUCGCCAGUGCCAAAGUUCUGCCACACUUUUAAUGAACCAUAUAUAUAUGUAUGUAUAUA----UCCACAGACG-GCGGCAAAA ......((((((((.(((.((......)).)))..............(((((((((....))))))))----)........)-))))))).. ( -21.10) >DroSim_CAF1 4909 87 - 1 CGUUACUUGUCGCCAGUGCCAAAGUUCUGCCACACUUUUAAUGAACCAUAUAUAUAUGUAUGUAUAUA----UCCACAGACG-GCGGCAAAA ......((((((((.(((.((......)).)))..............(((((((((....))))))))----)........)-))))))).. ( -21.10) >DroEre_CAF1 5207 71 - 1 CGUUACCUGUCGCCAGUGCCAAAGUUCUGCCACACUUUUAAUGAACCAUAUAUUUAUAU--------------------ACG-GCGGCAAGG .....(((((((((.(((.((......)).))).......(((((.......)))))..--------------------..)-))))).))) ( -16.70) >consensus CGUUACUUGUCGCCAGUGCCAAAGUUCUGCCACACUUUUAAUGAACCAUAUAUAUAUGUAUGUAUAUA____UCCACAGACG_GCGGCAAAA ......((((((((.(((.((......)).)))..............((((((....))))))..................).))))))).. (-11.86 = -12.80 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:22 2006