Locus 4245

Sequence ID	2L_DroMel_CAF1
Location	12,120,903 – 12,121,015
Length	112
Max. P	0.507164

overview

Window 4

Location	12,120,903 – 12,121,015
Length	112
Sequences	4
Columns	114
Reading direction	forward
Mean pairwise identity	87.32
Mean single sequence MFE	-27.95
Consensus MFE	-20.91
Energy contribution	-21.85
Covariance contribution	0.94
Combinations/Pair	1.15
Mean z-score	-1.38
Structure conservation index	0.75
SVM decision value	-0.05
SVM RNA-class probability	0.507164
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12120903 112 + 22407834
--UCGUUUUGUCGUGCAUUCAGACUACAAAGAAUGUAUAAAACGUGAAGUUUUAGUUUGACGGUUUGAGUAACACGAUCAGCGAUCCCACUUUUGCUGACUAGUGUAGUCAUGC
--(((..(((((((((((((..........))))))))(((((.....))))).....)))))..)))...((((..(((((((........)))))))...))))........ ( -29.20)
>DroSec_CAF1 1333 112 + 1
--UCGUCUUGUCGUGCAUUCAGACUACAAAGAAUGAAUAAAACGUGAAGUUUUAGUUUGAAUGUUUGAGCUACACGAUCAGUGAUCCCACUUUUGCUGACUAGUGUAGUCAUGC
--........(((.((((((((((((.((...(((.......)))....)).)))))))))))).)))(((((((..((((..(........)..))))...)))))))..... ( -32.90)
>DroSim_CAF1 1336 112 + 1
--UCGUUUUGUCGUGCAUUCAGACUACAAAGAAUAAAUAAAACGUGAAGUUUUAGCUUGACGGUUUGAGCUACACGAUCAGUGAUCCCACUUUUGCUGACUAGUGUAGUCAUGC
--(((..((((((.((((((..........))))...((((((.....)))))))).))))))..)))(((((((..((((..(........)..))))...)))))))..... ( -30.70)
>DroEre_CAF1 1240 114 + 1
AUUUAUUUAGUCGUGCAUUAAGAACAUAAAGAAUGAAUAAAACGUGAAGUUUUAGUUUGGCGUAUUGAUAGACACAAUCAGCGAUCUCAACUUUGCUAACUAGUGUAGUCAUGC
.........((((.((........(((.....)))..((((((.....)))))))).))))((((.(((..((((....(((((........))))).....)))).))))))) ( -19.00)
>consensus
__UCGUUUUGUCGUGCAUUCAGACUACAAAGAAUGAAUAAAACGUGAAGUUUUAGUUUGACGGUUUGAGCUACACGAUCAGCGAUCCCACUUUUGCUGACUAGUGUAGUCAUGC
..............(((((((((((...(((......((((((.....)))))).)))...)))))))(((((((..(((((((........)))))))...))))))).)))) (-20.91 = -21.85 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:21 2006