| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,120,547 – 12,120,642 |
| Length | 95 |
| Max. P | 0.848558 |
| Location | 12,120,547 – 12,120,642 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 69.81 |
| Mean single sequence MFE | -30.76 |
| Consensus MFE | -8.60 |
| Energy contribution | -9.29 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.28 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.848558 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12120547 95 + 22407834 UGUUCAGCUUUUUAAGGCUGAAUAGUU--------------UAUGCUGGAAUCAUUUCAAUGGC-UCGAGUAUUGCCAAAUUUUUUU---UUCUAGCUGUGAAGCU------G-AGCGUG .((((((((((....(((((((.((((--------------((((((.((..(((....)))..-)).)))))....))))).....---))).))))..))))))------)-)))... ( -29.70) >DroPse_CAF1 31382 103 + 1 UGUUGGUCUU------GUAAUGUAGUUUGGCAUGUGCUU--UAUUUAGAAAUAAUUUCUUUUGCCACGGCUAUUGCCAAAUUUG-UUCGGUUAUGCCCGUG--GCC------GCAACGUG .((((.....------.......(((((((((...(((.--.....((((.....))))........)))...)))))))))..-..(((((((....)))--)))------)))))... ( -25.24) >DroSec_CAF1 981 109 + 1 UGUUCAGCAUUUUCAGACAGAAUAGUUUGGCAUGUGCUUUUUAUGCUGGAAUCAUUUCAAUGGC-CCGAGUAUUGCCAAAUUUA-UU---UUCUAGCUGUGAAGCU------GAAGCGUG ..((((((.(((.(((..((((.(((((((((.((((((.....(((.(((....)))...)))-..)))))))))))))))..-..---))))..))).))))))------)))..... ( -33.80) >DroSim_CAF1 984 109 + 1 UAUUCAGCUCUUUCAGGCAGAAUAGUUUGGCAUGUACUUUUUAUGCUGGAAUCAUUUCAAUGGC-UCGAGUAUUGCCAAAUUUA-UU---UUCUAGCUGUGAAGCU------GAAGCGUG ..(((((((...((((((((((.(((((((((.((((((.....(((.(((....)))...)))-..)))))))))))))))..-..---)))).))).)))))))------)))..... ( -34.70) >DroAna_CAF1 933 113 + 1 UGUUUGGCUUUUCGCGGCGAAGAAGCUUGGCAUGUGCUU--CAAGCUGGAAUUAUUUCAAUUGC-UCGGCUAUUGCCAAAUUUA-UU---UUCUAGCUAAGAAGCUCGAGUGGAAGCGUG ......(((((.(((.((.(((...))).)).((.((((--(.((((((((.......((((..-..(((....))).))))..-..---))))))))..))))).)).))))))))... ( -31.90) >DroPer_CAF1 31280 103 + 1 UGUUGGUCUU------GUAAUGUAGUUUGGCAUGUGCUU--UAUUUAGAAAUAAUUUCUUUGGCCACGGCUAUUGCCAAAUUUG-UUCGGUUAUGCCCGUG--GCC------GCAACGUG .((..(.((.------.......)).)..))((((((..--...(((....))).......((((((((.(((.(((.......-...))).))).)))))--)))------)).)))). ( -29.20) >consensus UGUUCAGCUUUUU_AGGCAAAAUAGUUUGGCAUGUGCUU__UAUGCUGGAAUCAUUUCAAUGGC_UCGACUAUUGCCAAAUUUA_UU___UUCUAGCUGUGAAGCU______GAAGCGUG ....(((((..............(((((((((..............((((.....))))..............)))))))))............)))))..................... ( -8.60 = -9.29 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:20 2006