Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,117,414 – 12,117,597 |
Length | 183 |
Max. P | 0.925209 |
Location | 12,117,414 – 12,117,533 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.31 |
Mean single sequence MFE | -27.22 |
Consensus MFE | -25.06 |
Energy contribution | -23.70 |
Covariance contribution | -1.36 |
Combinations/Pair | 1.21 |
Mean z-score | -1.14 |
Structure conservation index | 0.92 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.607387 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12117414 119 - 22407834 CCUCAUAUAUGGACCA-GCAACACCCUUUUAUAGGGGUAGGUAUAUCUAAUUUCCAUAAGUCUGCUUAUUUUCCGUGUAUUUCGCUGAUGUUAUUCGGAUAGUGGCGACACAAAAGAAAG .....((((((((..(-(((((((((((....)))))).((............))....)).)))).....))))))))((((.((((......))))...(((....)))....)))). ( -28.40) >DroSec_CAF1 19546 120 - 1 CCUCAUAUAUGGACUAUAUAACACCCUUAUAUAGGGGUAGGUAUAUCUAAUUUCCAUAAGUCUGCUUAUUUUCUGUGUAUUUUGCUGAUUUUAUUCAGAUAGUGGCGACACAAAAGAAAG .......((((((((((((((.....))))))))(((((....)))))....)))))).(((((..((...((.(((.....))).))...))..))))).(((....)))......... ( -25.50) >DroSim_CAF1 19433 120 - 1 CCUCAUAUAUGGACUAUAUAACACCCUUAUAUAGGGGUAGGUAUAUCUAAUUUCCAUAAGUAUGCUUAUUUUCUGUGUAUUUUGCUGAUUUUAUUCAGAUAGUGGCGACACAAAAGAAAG ....(((((((((((((((((.....))))))))(((((((((((..((.......))..))))))))))))))))))))....((((......))))...(((....)))......... ( -27.30) >DroEre_CAF1 19823 119 - 1 CCUCAUAUAUGGACGA-CCAACACCCCUAUAUAGGGGUAGCUAUAUCUAAUUUCCAUAAGUUUGUUUAUUUUCCGUGUAUUUCGCUGAUGUUAUUCGGAUAGUGGCGACACAAAAGAAAG .....((((((((.((-..(((((((((....))))))((((................)))).)))..)).))))))))((((.((((......))))...(((....)))....)))). ( -27.49) >DroYak_CAF1 19756 119 - 1 CCGCAUAUAUGGACUA-CCAACACCCUUUUAUAGGGGUAGCUAUAUCUAAUUUCCAUGAGUCUGUUUAUUUUCCGUGUAUUUCGCUGAUGUUAUUCGGAUAGUGGCGACACAAAAGCAAG ..((..((((((.(((-((.....(((.....)))))))))))))).......((((..(((((..((...((.(((.....))).))...))..))))).))))..........))... ( -27.40) >consensus CCUCAUAUAUGGACUA_ACAACACCCUUAUAUAGGGGUAGGUAUAUCUAAUUUCCAUAAGUCUGCUUAUUUUCCGUGUAUUUCGCUGAUGUUAUUCGGAUAGUGGCGACACAAAAGAAAG ..(((((((((((.........((((((....)))))).................(((((....)))))..)))))))))....((((......))))...(((....)))....))... (-25.06 = -23.70 + -1.36)
Location | 12,117,494 – 12,117,597 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.05 |
Mean single sequence MFE | -24.80 |
Consensus MFE | -19.11 |
Energy contribution | -19.17 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.07 |
Mean z-score | -2.14 |
Structure conservation index | 0.77 |
SVM decision value | 1.17 |
SVM RNA-class probability | 0.925209 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12117494 103 + 22407834 CUACCCCUAUAAAAGGGUGUUGC-UGGUCCAUAUAUGAGGUUUAUAUUAUGC----------------AAAAUAUGGGCUUCGUAAUUAAUCUAUUAGAUUGUUGUUUAUGUAACCAAAC .(((((........)))))....-((((.(((((((((((((((((((....----------------..)))))))))))))))..(((((.....))))).....))))..))))... ( -25.90) >DroSec_CAF1 19626 104 + 1 CUACCCCUAUAUAAGGGUGUUAUAUAGUCCAUAUAUGAGGUUUAUAUUAUGC----------------AAAAUAUGGGCUUCGUAAUUAAUCUAUUAGAUUGUUGUUGAUUUAACUAAAC ..((((........))))((((...((((.((((((((((((((((((....----------------..)))))))))))))))..(((((.....))))).))).))))))))..... ( -23.00) >DroSim_CAF1 19513 104 + 1 CUACCCCUAUAUAAGGGUGUUAUAUAGUCCAUAUAUGAGGUUUAUAUUAUGC----------------AAAAUAUGGGCUUCGUAAUUAAUCUAUUAGAUUGUUGUUUUAUUAACCAAAC ..((((........))))((((.((((..((..(((((((((((((((....----------------..)))))))))))))))..(((((.....))))).))..))))))))..... ( -23.50) >DroEre_CAF1 19903 119 + 1 CUACCCCUAUAUAGGGGUGUUGG-UCGUCCAUAUAUGAGGCUUAUAUUAUGUAUUACGGCGACAAUGAAAAAUAUGUGCUUCGUAAUUAAUCCUUUAGAUUCUUGUUUAUUUAACAAAAC .(((((((....))))))).(((-....)))..((((((((.((((((...((((..(....)))))...)))))).)))))))).................(((((.....)))))... ( -26.80) >consensus CUACCCCUAUAUAAGGGUGUUAU_UAGUCCAUAUAUGAGGUUUAUAUUAUGC________________AAAAUAUGGGCUUCGUAAUUAAUCUAUUAGAUUGUUGUUUAUUUAACCAAAC ..((((........))))((((...........(((((((((((((((......................)))))))))))))))..(((((.....))))).........))))..... (-19.11 = -19.17 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:14 2006