Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,117,234 – 12,117,347 |
Length | 113 |
Max. P | 0.968973 |
Location | 12,117,234 – 12,117,347 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.31 |
Mean single sequence MFE | -33.04 |
Consensus MFE | -29.62 |
Energy contribution | -29.62 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.10 |
Mean z-score | -1.64 |
Structure conservation index | 0.90 |
SVM decision value | 1.63 |
SVM RNA-class probability | 0.968973 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12117234 113 + 22407834 AAUAGCACUGGGCACUUAAGGAGAGGCCCCAUUACCCGGCCAAGAACAACAAAAGCUGGCCCGCACGUAAUCUGAUAUUGCAACGGUGAGGCAA-------GCAGCUGAAAAAGAGUGCA ....(((((((((.(((.....))))))).......((((...(.....)....(((.((((((..(((((.....)))))....))).))).)-------)).))))......))))). ( -32.80) >DroSec_CAF1 19368 113 + 1 AAUAGCACUGGGCACUUAAGGAGAGGCCCCAGUACCCGGCCAAGAACAACAAAAGCUGGCCCGCACGUAAUCUGAUAUUGCAACGGUGAGGCAA-------CCAGCUGAAAAAGAGUGCA ......((((((..(((.....)))..))))))....(((((..............))))).(((((((((.....)))))..((((..(....-------)..)))).......)))). ( -33.34) >DroSim_CAF1 19254 113 + 1 AAUAGCACUGGGCACUUAAGGAGAGGCCCCAGUACCCGGCCAAGAACAACAAAAGCUGGCCCGCACGUAAUCUGAUAUUGCAACGGUGAGGCAA-------CCAGCUGAAAAAGAGUGCA ......((((((..(((.....)))..))))))....(((((..............))))).(((((((((.....)))))..((((..(....-------)..)))).......)))). ( -33.34) >DroEre_CAF1 19645 117 + 1 AAAAGCACUGGGCACUUAAGGAGAGGCCCCAGUUCCCGG---CCAACAACAAAAGCUGGCCCGCACGUAAUCUGAUAUUGCAACGGUGAGGCAACCAGCAACCAGCUGAAAAAGAGUGCG ....(((((((((.(((.....)))))))(((((...((---(((.(.......).))))).((..(((((.....)))))...(((......))).))....)))))......))))). ( -36.10) >DroYak_CAF1 19572 113 + 1 AAUAGCACUGGGCACUUAAGGAGAGGCCCCAGUACCCAGUACCCAACAACAAAAGCUGGCCCGCACGUAAUCUGAUAUUGCAACGGUGAGGCAA-------CCAGUUGAAAAAGAGUGCA ....((((((((..(((.....)))..))))))..(((((..............)))))...))..(((.(((.......(((((((......)-------)).))))....))).))). ( -29.64) >consensus AAUAGCACUGGGCACUUAAGGAGAGGCCCCAGUACCCGGCCAAGAACAACAAAAGCUGGCCCGCACGUAAUCUGAUAUUGCAACGGUGAGGCAA_______CCAGCUGAAAAAGAGUGCA ....(((((((((.(((.....)))))))((((...((((..............))))((((((..(((((.....)))))....))).)))............))))......))))). (-29.62 = -29.62 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:12 2006