Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,116,327 – 12,116,432 |
Length | 105 |
Max. P | 0.972134 |
Location | 12,116,327 – 12,116,432 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 88.64 |
Mean single sequence MFE | -20.80 |
Consensus MFE | -19.35 |
Energy contribution | -19.35 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.06 |
Structure conservation index | 0.93 |
SVM decision value | 1.69 |
SVM RNA-class probability | 0.972134 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12116327 105 - 22407834 AAAAAACCCUUGGCUAUCUAAUGAUGAUCAUUAGGAGCGGUACUGUAAUCACACAGAAGCCAAACACAAACUCAAACUCCCAGCUCAACCUUAAGCCAGUUCUC-------------C .........((((((..((((((.....))))))((((((..((((......))))..(.....)..............)).)))).......)))))).....-------------. ( -21.10) >DroSec_CAF1 18446 105 - 1 AAAAAACCCUUGGCUAUCUAAUGAUGAUCAUUAGGAGCGGUACUGUAAUCACACAGAAGCUAAACUCAAACUCAAACUCCCAGCUGAACCUUAAGCCAGUUCUU-------------C .........((((((.(((((((.....)))))))...(((.((((......)))).((((....................))))..)))...)))))).....-------------. ( -20.65) >DroSim_CAF1 18279 105 - 1 AAAAAACCCUUGGCUAUCUAAUGAUGAUCAUUAGGAGCGGUACUGUAAUCACACAGAAGCUAAACUCAAACUCAAACUCCCAGCUGAACCUUAAGCCAGUUCUU-------------C .........((((((.(((((((.....)))))))...(((.((((......)))).((((....................))))..)))...)))))).....-------------. ( -20.65) >DroYak_CAF1 18623 112 - 1 AAAAAACCCUUGGCUAUCUAAUGAUGAUCAUUAGGAGCGGUACUGUAAUCACACAGAAGCCAA------ACUCCAACUCCCAGCUGAACCUUAAGCCAGUUCCCCUUUCCCCUUCUUC .........((((((...(((((.....)))))((((.(((.((((......))))..)))..------.))))...................))))))................... ( -20.80) >consensus AAAAAACCCUUGGCUAUCUAAUGAUGAUCAUUAGGAGCGGUACUGUAAUCACACAGAAGCCAAACUCAAACUCAAACUCCCAGCUGAACCUUAAGCCAGUUCUC_____________C .........((((((.(((((((.....)))))))...(((.((((......)))).(((......................)))..)))...))))))................... (-19.35 = -19.35 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:07 2006