Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,115,809 – 12,115,928 |
Length | 119 |
Max. P | 0.740451 |
Location | 12,115,809 – 12,115,928 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.31 |
Mean single sequence MFE | -30.58 |
Consensus MFE | -26.94 |
Energy contribution | -26.58 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.13 |
Mean z-score | -1.33 |
Structure conservation index | 0.88 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.740451 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12115809 119 + 22407834 ACAAUGGUCGCACAGCCGCAAA-AAACGCACUCGGAAUUGGAAAACCGGGGAAACCAGAAGGGAGAAGACCGAGAGUGUGGAGAUCAAGGGAGAGAAUGUAGGUUGCACUGGCUUUAAUU .....(((((..((((((((..-..((((.(((((..((....))((.((....))....)).......))))).)))).....((......))...))).)))))...)))))...... ( -29.10) >DroSec_CAF1 17909 120 + 1 ACAAUAGUCGCACAGCCGCAAAAAAACGCACUCGGAAUUGGAAAACCGGGGAAACCAGAAGGGAGAAGACCGAGAGUGUGGAGAUCAAGGGAGAGAAUGUAGGUUGCAUUGGCUUUAAUU .....(((((..((((((((.....((((.(((((..((....))((.((....))....)).......))))).)))).....((......))...))).)))))...)))))...... ( -29.10) >DroSim_CAF1 17744 119 + 1 ACAAUGGUCGCACAGCCGCAAA-AAACGCACUCGGAAUUGGAAAACCGGGGAAACCAGAAGGGAGAAGACCGAGAGUGUGGAGAUCAAGGGAGAGAAUGUAGGUUGCAUUGGCUUUAAUU ....(((((((......))...-..((((.(((((..((....))((.((....))....)).......))))).))))...)))))..((((..(((((.....)))))..)))).... ( -31.70) >DroEre_CAF1 18170 119 + 1 ACAAUAGUCGCACAGCCGCAAA-AAACGCACUCGGAGUUUGAAAACCGGGGAAACCAGAAGGGAGAGGACCGAGAGUGUGGAGAUCAAGGGAGGGAAUAUAGGUUGCAUUGGCUUUAAUU .....(((((..(((((.....-...(((((((...((((.....((.((....))....))....))))...)))))))....((....)).........)))))...)))))...... ( -30.40) >DroYak_CAF1 18052 119 + 1 ACAAUAGUCGCACAGCCGCAAA-AAACGCACUCGCAGCUGGAAAACCGGGGAAACCAGAAGGGAGAAGGCCGAGAGUGCGGAGAUCAAGGGAGAGAAUGUAGGUUGCAUUGGGUUUAAUU ....(((.(.((((((((((..-...(((((((.(.(((......((.((....))....)).....))).).)))))))....((......))...))).)))))...)).).)))... ( -32.60) >consensus ACAAUAGUCGCACAGCCGCAAA_AAACGCACUCGGAAUUGGAAAACCGGGGAAACCAGAAGGGAGAAGACCGAGAGUGUGGAGAUCAAGGGAGAGAAUGUAGGUUGCAUUGGCUUUAAUU .....(((((..(((((.........(((((((............((.((....))....))...........)))))))....((......)).......)))))...)))))...... (-26.94 = -26.58 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:06 2006