Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,111,717 – 12,111,837 |
Length | 120 |
Max. P | 0.737396 |
Location | 12,111,717 – 12,111,837 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -45.43 |
Consensus MFE | -39.76 |
Energy contribution | -39.84 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.11 |
Mean z-score | -1.31 |
Structure conservation index | 0.88 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.737396 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12111717 120 + 22407834 CUUGGCUCUAAGGGUCAGGAUGUGCACACCACGAACCUGUGCACAGGUCCUCUCACCGGCGGCACCAGCUUUUGCACCUCGGACUCCGGUGGUCCGCUGGUCCAGGGAAACGUUCUAAUC (((((((.....))))))).((((((((.........))))))))..((((...((((((((.((((((....))...((((...))))))))))))))))...))))............ ( -47.20) >DroSec_CAF1 13807 120 + 1 CUGGGCACUAAGGGUCAGGAUGUGCACACCACGAACCUGUGCACAGGUCCUCUCACCGGCGGCACCAGCUUUUGCACCUCGGACUCCGGAGGUCCGCUGGUCCAGGGAAACGUUCUAAUC ((((((.....(((..((((((((((((.........))))))))..)))))))..((((((.(((.((....))...((((...)))).)))))))))))))))(....)......... ( -46.80) >DroSim_CAF1 13649 120 + 1 CUGGGCACUAAGGGUCAGGAUGUGCACACCACGAACCUGUGCACUGGUCCUCUCACCGGCGGCACCAGCUUUUGCACCUCUGACUCCGGUGGUCCGCUGGUCCAGGGAAACGUUCUAAUC ((((((.....(((..((((((((((((.........)))))))..))))))))..((((((.((((((....))....(((....)))))))))))))))))))(....)......... ( -45.50) >DroEre_CAF1 13965 120 + 1 CUGGGCACUAAGGGUCGGGAUGUGCACACCACAAAUCUCUGCACAGGUCCCCUCACCGGCGGCACCAGCUUUUGCACCUCGGACUCCGGUGGUCCGCUGGUCCAGGGAAAUGUCCUAAUC ((((((.....(((..((((((((((.............))))))..)))))))..((((((.((((((....))...((((...))))))))))))))))))))(((....)))..... ( -44.42) >DroYak_CAF1 13990 120 + 1 CUAGGCACCAAGGGUCAGGAUGUGCACACCACGAAUCUUUGCACAGGUCCUCUCACUGGCGGCACCAGCUUCUGCACCUCGGAUUCCGGUGGUCCGCUGGUCCAGGGAAAUGUCCUGAUC ............((((((((((((((.............)))))...((((...((..((((.((((((....))...((((...))))))))))))..))...))))...))))))))) ( -43.22) >consensus CUGGGCACUAAGGGUCAGGAUGUGCACACCACGAACCUGUGCACAGGUCCUCUCACCGGCGGCACCAGCUUUUGCACCUCGGACUCCGGUGGUCCGCUGGUCCAGGGAAACGUUCUAAUC ...(((.(....))))((((((((((((.........)))))))...((((...((((((((.((((((....))...((((...))))))))))))))))...))))...))))).... (-39.76 = -39.84 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:56 2006