Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,111,318 – 12,111,438 |
Length | 120 |
Max. P | 0.565650 |
Location | 12,111,318 – 12,111,438 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.92 |
Mean single sequence MFE | -40.84 |
Consensus MFE | -35.72 |
Energy contribution | -35.44 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.06 |
Mean z-score | -1.20 |
Structure conservation index | 0.87 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.565650 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12111318 120 - 22407834 GCUCGCUGUUCCGGCCACCGCAAUGCUUCCAGCCACCAGGGUGCUUCCAAGUACUUGAUUCCUAUUGGCCAGGCAGUGAGCAGCCGUUACCAGCCAGUUGGAAUUAAUGAUGUUAGCGGC ((((((((((..(((((((.....((.....)).....))(((((....)))))...........))))).)))))))))).(((((((.((.((....)).........)).))))))) ( -43.00) >DroSec_CAF1 13408 120 - 1 GCUCGCUGUUCCGGCCACCGCAAUGCUUCCAGCCACCAGGGUGCUUCCAAGUACUUGAUUCCUAUUGGCCAGGCAGUGAGCAGCCGUUACCAGCCAGUUGGAAUUAAUGAUGUUAGCAGC ((((((((((..(((((((.....((.....)).....))(((((....)))))...........))))).))))))))))...(((((((((....))))...)))))........... ( -37.40) >DroSim_CAF1 13250 120 - 1 GCUCGCUGUUCCGGCCACCGCAAUGCUUCCAGCCACCAGGGUGCUUCCAAGUACUUGAUUCCUAUUGGCCAGGCAGUGAGCAGCCGUUACCAGCCAGUUGGAAUUAAUGAUGUUAGCAGC ((((((((((..(((((((.....((.....)).....))(((((....)))))...........))))).))))))))))...(((((((((....))))...)))))........... ( -37.40) >DroEre_CAF1 13565 120 - 1 GCUCGCUGUUCCGGCCACCGCAAUGCUUCCUGCCACCAAGGUGCUUCCAAGUACUUGAUUCUUGUUGGCCAGGCAGUGAGCAGCCGUUACCAACCAGUUGGAAUUCACAAUGUUAGCUGC ((((((((((..(((((..((((.((.....)).....(((((((....))))))).....))))))))).)))))))))).((.((((((((....))))............)))).)) ( -38.10) >DroYak_CAF1 13591 120 - 1 GCUCGCUGUUCCGGCCACCGCAAUGCUUCCUGCCACCAAGGUGCUGCCAAGUACUUGGUUCCUGUUGGCCAGGCAGUGAGCAGCUGUUAACAACCAGUUGGAACUGAUAAUGUUAGCUGC ((((((((((..(((((.((((........))).((((((.((((....))))))))))....).))))).)))))))))).((.(((((((..((((....))))....))))))).)) ( -48.30) >consensus GCUCGCUGUUCCGGCCACCGCAAUGCUUCCAGCCACCAGGGUGCUUCCAAGUACUUGAUUCCUAUUGGCCAGGCAGUGAGCAGCCGUUACCAGCCAGUUGGAAUUAAUGAUGUUAGCAGC ((((((((((..(((((.......((.....)).....(((((((....))))))).........))))).)))))))))).((.((((((((....))))............)))).)) (-35.72 = -35.44 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:55 2006