Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,109,809 – 12,109,929 |
Length | 120 |
Max. P | 0.655067 |
Location | 12,109,809 – 12,109,929 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.78 |
Mean single sequence MFE | -47.61 |
Consensus MFE | -39.24 |
Energy contribution | -39.52 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.21 |
Mean z-score | -1.93 |
Structure conservation index | 0.82 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.655067 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12109809 120 + 22407834 UGGCACCCAUUACUGUGCCGCCAGCAUUCUGAAUGCCAACUGGCUAGUCACCGCUGCCCACUGCCUGACCAAUAGUAACCAGGUGCUGGGCAGCACCUUGGUGGCCGGAAGCAUCGCGGU .(((((........)))))((..((.(((((...(((....)))..((((((((((((((..(((((............)))))..)))))))).....)))))))))))))...))... ( -51.60) >DroPse_CAF1 13208 120 + 1 AGGAACUCACUAUUGUGCCGCCAGCAUCCUGAAUACCAACUGGCUGGUGACGGCCGCCCAUUGCCUGACGAACAGCGCUCAAGUGCUGGGAAGCACUUUAGUCGCAGGAAGCAUUGCAGU ........((((..((((..(((((((..(((.........(((((....))))).......(((((.....))).))))).)))))))...))))..)))).((((......))))... ( -41.40) >DroSec_CAF1 11930 120 + 1 UGGCACCCACUACUGUGCCGCCAGCAUUCUGAAUGCCAACUGGCUGGUUACCGCCGCCCACUGCCUGACCAAUAGUAACCAGGUCCUGGGCAGCACUCUGGUGGCCGGAAGCAUCGCGUG .(((((........)))))((..((.((((....(((....))).(((((((((.(((((..(((((............)))))..))))).)).....)))))))))))))...))... ( -46.30) >DroSim_CAF1 11740 120 + 1 UGGCACCCACUACUGUGCCGCCAGCAUUCUGAAUGCCAACUGGCUGGUUACCGCCGCCCACUGCCUGACCAAUAGUAACCAGGUACUGGGCAGCACCCUGGUGGCCGGAAGCAUCGCGGU .(((((........)))))((..((.((((....(((....))).(((((((((.(((((.((((((............)))))).))))).)).....)))))))))))))...))... ( -47.80) >DroEre_CAF1 12141 120 + 1 AGGCACCCACUACUGUGCGGCCAGCAUCCUGAAUGCCAACUGGCUGGUCACCGCUGCCCACUGCCUCACCAACAGUAACCAGGUGCUGGGCAGCACCCUGGUGGCCGGAAGUAUCCAGGU .(((((((((....))).)).(((....)))..))))..(((((((((((((((((((((..((((..............))))..)))))))).....)))))))))......)))).. ( -49.74) >DroYak_CAF1 12088 120 + 1 AGGCACCCACUACUGUGCGGCCAGCAUCCUGAAUGUCAACUGGCUGGUCACCGCCGCCCACUGCCUGACCAACAGUAACCAGGUGCUGGGCAGCACACUGGUGGCCGGAAGCAUCGAGGU .(((...(((((.((((((((((((....((.....))....)))))))......(((((..(((((............)))))..))))).))))).)))))))).............. ( -48.80) >consensus AGGCACCCACUACUGUGCCGCCAGCAUCCUGAAUGCCAACUGGCUGGUCACCGCCGCCCACUGCCUGACCAACAGUAACCAGGUGCUGGGCAGCACCCUGGUGGCCGGAAGCAUCGCGGU .(((...(((....)))..))).((.(((.....(((....))).(((((((((.(((((.((((((............)))))).))))).)).....)))))))))).))........ (-39.24 = -39.52 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:53 2006