Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,244,703 – 1,244,793 |
Length | 90 |
Max. P | 0.546558 |
Location | 1,244,703 – 1,244,793 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 82.80 |
Mean single sequence MFE | -17.05 |
Consensus MFE | -11.70 |
Energy contribution | -11.70 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.56 |
Structure conservation index | 0.69 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.546558 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1244703 90 + 22407834 UUUUGAAGCCUAUGCUUCUGGCAGACCCAGCUUCAAUUUCCGAGUGCCAUCCUCCACAG-GCCCAACUCCCCACACUCUGCUCCACCCACU ..(((((((...(((.....)))......))))))).....(((((((..........)-))...))))...................... ( -16.10) >DroSec_CAF1 4590 76 + 1 UUUUGAAGCCGAUGCUUCUGGCAGACCGAGCUUCAAUUUCCGAGUGCCAUCCUCCACAG-GCCCAGCU--------------CCUCCCACU ..(((((((((.(((.....)))...)).))))))).....(((((((..........)-))...)))--------------)........ ( -19.50) >DroSim_CAF1 4959 90 + 1 UUUUGAAGCCGAUGCUUCUGGCAGACCGAGCUUCAAUUUCCGAGUGCCAUCCUCCACAG-GCCCAGCUCCCCACACUCUGCUCCUCCCACU ..(((((((((.(((.....)))...)).))))))).....(((((((..........)-))...))))...................... ( -19.50) >DroYak_CAF1 5064 75 + 1 UUUUGAAGCCGAUGCUUCUGGCAGAGCCAGCUUCAAUUUCCGAGUGCCAUCCUACACACCACCCAACU----------------UCCCACU ..(((((((.((....))((((...))))))))))).......(((........)))...........----------------....... ( -13.10) >consensus UUUUGAAGCCGAUGCUUCUGGCAGACCCAGCUUCAAUUUCCGAGUGCCAUCCUCCACAG_GCCCAACU______________CCUCCCACU ..(((((((...(((.....)))......))))))).......(((........))).................................. (-11.70 = -11.70 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:51 2006