Locus 423

Sequence ID 2L_DroMel_CAF1
Location 1,244,703 – 1,244,793
Length 90
Max. P 0.546558
window687

overview

Window 7

Location 1,244,703 – 1,244,793
Length 90
Sequences 4
Columns 91
Reading direction forward
Mean pairwise identity 82.80
Mean single sequence MFE -17.05
Consensus MFE -11.70
Energy contribution -11.70
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.56
Structure conservation index 0.69
SVM decision value 0.03
SVM RNA-class probability 0.546558
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1244703 90 + 22407834
UUUUGAAGCCUAUGCUUCUGGCAGACCCAGCUUCAAUUUCCGAGUGCCAUCCUCCACAG-GCCCAACUCCCCACACUCUGCUCCACCCACU
..(((((((...(((.....)))......))))))).....(((((((..........)-))...))))...................... ( -16.10)
>DroSec_CAF1 4590 76 + 1
UUUUGAAGCCGAUGCUUCUGGCAGACCGAGCUUCAAUUUCCGAGUGCCAUCCUCCACAG-GCCCAGCU--------------CCUCCCACU
..(((((((((.(((.....)))...)).))))))).....(((((((..........)-))...)))--------------)........ ( -19.50)
>DroSim_CAF1 4959 90 + 1
UUUUGAAGCCGAUGCUUCUGGCAGACCGAGCUUCAAUUUCCGAGUGCCAUCCUCCACAG-GCCCAGCUCCCCACACUCUGCUCCUCCCACU
..(((((((((.(((.....)))...)).))))))).....(((((((..........)-))...))))...................... ( -19.50)
>DroYak_CAF1 5064 75 + 1
UUUUGAAGCCGAUGCUUCUGGCAGAGCCAGCUUCAAUUUCCGAGUGCCAUCCUACACACCACCCAACU----------------UCCCACU
..(((((((.((....))((((...))))))))))).......(((........)))...........----------------....... ( -13.10)
>consensus
UUUUGAAGCCGAUGCUUCUGGCAGACCCAGCUUCAAUUUCCGAGUGCCAUCCUCCACAG_GCCCAACU______________CCUCCCACU
..(((((((...(((.....)))......))))))).......(((........))).................................. (-11.70 = -11.70 +   0.00) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:51 2006