Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,106,242 – 12,106,362 |
Length | 120 |
Max. P | 0.650043 |
Location | 12,106,242 – 12,106,362 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.78 |
Mean single sequence MFE | -38.85 |
Consensus MFE | -24.81 |
Energy contribution | -25.37 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.33 |
Mean z-score | -2.23 |
Structure conservation index | 0.64 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.650043 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12106242 120 + 22407834 GGAUGCACUGAAGCGUGCCCAUCAGUGCGCCACCAUCCAGUUGGACUUCCAGCUGCCAAUUCGUUUUAAUCUCAGCUACAUCGCCGACGAUGGCGAGAAGAAGAGGCCGGUGAUCAUCCA (((((((((((.(......).)))))))..((((...(((((((....)))))))..............((((..((...(((((......)))))..))..))))..))))...)))). ( -43.50) >DroPse_CAF1 8898 120 + 1 GGAUGCAUUGAAGCGGGCACAUCAGUGCGCCACCAUACAAUUGGAUUUCCAGCUACCCAUUCGCUUUAAUCUCAACUACAUUGCCGACGACGGCGAGAAGAAGCGUCCAGUGAUCAUCCA ((((((((((.(((((((((....)))).)).(((......))).......))).......((((((..((((.........((((....)))))))).))))))..)))))..))))). ( -38.80) >DroGri_CAF1 9035 120 + 1 GGAUGCACUGAAGCGUCCAUUCCAAUGUGCUACGAUACAGUUGGAUUUCCAGCUGCCGAUACGCUUCAAUCUCAACUAUAUUGCCGACGAUGGUGAAAAGAAGCGUCCGGUUAUCAUACA ((((((......))))))...............(((((((((((....)))))))(((..(((((((....(((....(((((....))))).)))...))))))).))).))))..... ( -38.00) >DroWil_CAF1 7939 120 + 1 GGAUGCUUUAAAACGGGCUCACCAAUGUGCCACUAUUCAGUUAGAUUUUCAACUGCCAAUACGCUUCAAUCUUAACUAUAUUGCAGAUGAUGGAGAAAAGAAGCGUCCAGUGAUUAUUCA (((((((((....(((((.((....)).)))......(((((.(.....))))))......))((((((((((((.....))).))))..)))))....)))))))))............ ( -26.20) >DroAna_CAF1 8728 120 + 1 GGAUGCUCUGAAACGCGCUCACCAGUGCGCUACCAUCCAGCUGGACUUCCAGUUGCCCAUUCGCUUCAAUCUCAGCUACAUCGCCGACGAUGGUGAGAAGAAGCGGCCGGUGAUCAUCCA (((((.((.....((((((....))))))..(((...(((((((....))))))).....(((((((..(((((....(((((....))))).))))).)))))))..))))).))))). ( -48.20) >DroPer_CAF1 10189 120 + 1 GGAUGCUUUGAAGCGGGCACAUCAGUGCGCCACCAUACAAUUGGAUUUCCAGCUACCCAUUCGCUUUAAUCUCAACUACAUUGCCGACGACGGCGAGAAGAAGCGUCCAGUGAUCAUCCA ((((((((((((((((((((....)))).)).........((((....))))..........))))).............((((((....))))))...)))))))))............ ( -38.40) >consensus GGAUGCACUGAAGCGGGCACACCAGUGCGCCACCAUACAGUUGGAUUUCCAGCUGCCCAUUCGCUUCAAUCUCAACUACAUUGCCGACGAUGGCGAGAAGAAGCGUCCAGUGAUCAUCCA ((((((..(((((((.((.((....)).)).......(((((((....)))))))......))))))).......((.(.((((((....))))))).))..))))))............ (-24.81 = -25.37 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:52 2006