Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,102,954 – 12,103,059 |
Length | 105 |
Max. P | 0.651360 |
Location | 12,102,954 – 12,103,059 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 79.03 |
Mean single sequence MFE | -47.12 |
Consensus MFE | -29.89 |
Energy contribution | -31.12 |
Covariance contribution | 1.23 |
Combinations/Pair | 1.26 |
Mean z-score | -1.49 |
Structure conservation index | 0.63 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.651360 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12102954 105 - 22407834 UGGCCUCG---AAGGUGCAUCCAAGUCCGGGGGCGGCGCGCAGUGUGUGGGCGUUGCCCCUAACCGCCUCCUCCUCCUGCAACAUGGUCGUCGCGGAGGAGGAUGGCC .((((...---..((((.......((..(((((((((((.((.....)).))))))))))).))))))(((((((((.((.((......)).))))))))))).)))) ( -54.31) >DroPse_CAF1 5216 102 - 1 UGGCUUCCAGCAAGAUUCACCCCAGCCCGGGGGCGGCGCGGAGUGUGUGGGCGCUUCCCCUGACGGCAUCCUCAUCAUGCAAUAUGGUGGUGGCGGAGGAG------C ..(((((.................(((((((((.(((((...........))))).))))))..))).((((((((((........))))))).)))))))------) ( -38.40) >DroGri_CAF1 5918 99 - 1 UGGCCUCCAGCAAGGUACACCCCAGUCCGGGGGCAGCGCGCAGUGUUUGGGCGCUGCCCCUAACGGCCUCCUCGUCUUGCAACAUGG---------AAGAAGAUGGCC .((((........((.((......))))(((((((((((.(((...))).)))))))))))...)))).((((.((((.(.....).---------)))).)).)).. ( -43.70) >DroMoj_CAF1 5242 99 - 1 UGGCUUCCAGCAAGGUACACCCCAGCCCAGGGGCAGCGCGCAGUGUAUGGGCGCUGCCCCUGACGGCCUCUUCGUCAUGCAACAUGG---------AGGAAGACGGUC .((((.((.....))........))))((((((((((((.((.....)).))))))))))))..(((((((((.(((((...)))))---------..))))).)))) ( -48.20) >DroAna_CAF1 4934 105 - 1 UGGCCUCC---AAGGUGCACCCGAGUCCGGGGGCAGCGCGCAGUGUAUGGGCGCUGCCCCUGACAGCCUCCUCCUCAUGCAACAUGGUAGUGGCAGAGGAGGAUGGCC ..(((...---..)))........(((.(((((((((((.((.....)).)))))))))))))).(((((((((((.(((.((......)).))))))))))).))). ( -59.70) >DroPer_CAF1 6561 102 - 1 UGGCUUCCAGCAAGAUUCACCCCAGCCCGGGGGCGGCGCGGAGUGUGUGGGCGCUUCCCCUGACGGCAUCCUCAUCAUGCAAUAUGGUGGUGGCGGAGGAG------C ..(((((.................(((((((((.(((((...........))))).))))))..))).((((((((((........))))))).)))))))------) ( -38.40) >consensus UGGCCUCCAGCAAGGUACACCCCAGCCCGGGGGCAGCGCGCAGUGUGUGGGCGCUGCCCCUGACGGCCUCCUCAUCAUGCAACAUGGU_GUGGCGGAGGAGGAUGGCC ...(((((................(((((((((((((((.((.....)).))))))))))))..))).......(((((...)))))..........)))))...... (-29.89 = -31.12 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:51 2006