Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,093,703 – 12,093,812 |
Length | 109 |
Max. P | 0.613867 |
Location | 12,093,703 – 12,093,812 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 93.20 |
Mean single sequence MFE | -31.88 |
Consensus MFE | -29.20 |
Energy contribution | -30.04 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.03 |
Mean z-score | -1.14 |
Structure conservation index | 0.92 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.613867 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12093703 109 + 22407834 CGCACUAAGAUGUGAGUCAGUGUAGCCACACCUGUUCAGCUGACUGCGGUAUGCACCAGCAGCAGAUGAACGGUCCCACUGAUUGAUUCAGUCAGUCUUUAUUUUUUAC ......(((((.(((((((((.(((....(((.(((((.(((.(((((((....))).))))))).))))))))....))))))))))))....))))).......... ( -34.40) >DroSec_CAF1 30046 108 + 1 CGCACUAAGAUGCGAGUCAGUGUAGCCACACCUGUUCAGCUGACUGCGGUAU-CACCAGCAGCAGAUGAACGGUCCCACUGAUUGAUUUGGUCGUUCUUUAUUUUUUAC ((.((((((...(.((((((((..(((......(((((.(((.((((((...-..)).))))))).))))))))..))))))))).))))))))............... ( -34.40) >DroSim_CAF1 30498 108 + 1 CGCACUAAGAUGCGAGUCAGUGUAGCCACACCUGUUCAGCUGACUGCGGUAU-CACCAGCAGCAGAUGAACGGUCCCACUGAUUGAUUUGGUCGGUCUUUAUUUUUUAC ((.((((((...(.((((((((..(((......(((((.(((.((((((...-..)).))))))).))))))))..))))))))).))))))))............... ( -35.10) >DroEre_CAF1 36439 108 + 1 CGCACUAAGAUGCGAGCCAGUGUAGCCACACCUGUUCAGCGGACUUCGGUAUUCACCAGCAGCAGAUGAACGGUCCCACUGAUUGGUU-AGUCGGUCUUUAUUUUCUAU ((.((((....((.(..(((((..(((.((.(((((..((((((....)).....)).))))))).))...)))..)))))..).)))-)))))............... ( -24.80) >DroYak_CAF1 32289 108 + 1 CGCACUAAGGUGCGAGUCAGUGUAGCCACACCUGUCCAGCUGACUUCGGGAUUCACCAGCAGCAGAUGAACGGUCCCACUGAUUGAUU-AGUCGGUCUUUAUUUUCUAC (((((....)))))((((((((..(((.((.((((...((((.(....).......)))).)))).))...)))..))))))))(((.-.....)))............ ( -30.70) >consensus CGCACUAAGAUGCGAGUCAGUGUAGCCACACCUGUUCAGCUGACUGCGGUAU_CACCAGCAGCAGAUGAACGGUCCCACUGAUUGAUU_AGUCGGUCUUUAUUUUUUAC ((((......))))((((((((..(((......(((((.(((.((((((......)).))))))).))))))))..))))))))......................... (-29.20 = -30.04 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:50 2006