| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,093,125 – 12,093,229 |
| Length | 104 |
| Max. P | 0.716245 |
| Location | 12,093,125 – 12,093,229 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.79 |
| Mean single sequence MFE | -28.78 |
| Consensus MFE | -10.71 |
| Energy contribution | -11.22 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.37 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.716245 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12093125 104 + 22407834 UUGGGUGAUUAUUUUAGAUAAUCUUCGACUAAUGUCCUUGGUUUGUCUCUCA-------AGACAGGAGGGAUAUUG-AGGUGCUUCGA--A------UUUAAGUUUAUUAGUCUGAUGUA ...((.(((((((...))))))).))((((((((..(((((..((((((((.-------......))))))))(((-((....)))))--.------.)))))..))))))))....... ( -27.40) >DroSec_CAF1 29539 111 + 1 UUGGGUGAUUAUUUUAGAUAAUCUUCGACUAAUGUCCUUGGUUUGUGUCUCAAUUUGCGAGACAGGAGAGAUAUUG-AAGUGCUUCGA--A------UUUAAGUUUAUUAGUCUAAUGUA ...((.(((((((...))))))).))((((((((..((((((((.((((((.......)))))).))).....(((-((....)))))--.------.)))))..))))))))....... ( -28.70) >DroSim_CAF1 29910 111 + 1 UUGGGUGAUUAUUUUAGAUAAUCUUUGACUAAUGUCCUUGGUUUGUCUCUCAAUUUGCGAGACGGGAGGGAUAUUG-AAGUGCUUCGA--A------UUUAAGUUUAUUAGUCUAAUGUA ......(((((((...)))))))...((((((((..(((((.(((((((.(.....).)))))))((((.((....-..)).))))..--.------.)))))..))))))))....... ( -27.70) >DroEre_CAF1 29828 116 + 1 UUGGGUGAUUAUUUUAGAUAAUCUUCGCCUAAUGUCCUUGGUUUGUC--UCAAUUUGCGAGACAGGAGGGAUAUUU-A-AUGCUUCGCGAAGUGCUUCGGCAGUUUAUUAGUUGAGUUUC .(((((((..(((......)))..)))))))(((((((...((((((--((.......)))))))).)))))))..-.-..((((.(((((.(((....))).)))....)).))))... ( -35.00) >DroYak_CAF1 31710 109 + 1 UUGGGUGAUUAUUUUAGAUAAUCUUCGCCUAAUGUCCUUGGUUUGUC--UCAAUUUGCGAGACAGGAGGGAUAUUU-AAAUGCUUCGA--A------UGGCAGUUUAUUUGUUGAAUUUC .(((((((..(((......)))..)))))))(((((((...((((((--((.......)))))))).))))))).(-(((((((....--.------.)))).))))............. ( -29.00) >DroAna_CAF1 31156 96 + 1 UUGGGUGAUUAUUUUAGAUAAUCUUCAGCUAAUGCCCUUGGAUUGUUU--CGCUUUAUUGGCUUAGGGGAAUAUUCUAGGUGCU--AA--A------UGUUAGCUUGU------------ .((((.(((((((...)))))))))))((((((((.((((((.(((((--(.((..........)).)))))).)))))).)).--..--.------.))))))....------------ ( -24.90) >consensus UUGGGUGAUUAUUUUAGAUAAUCUUCGACUAAUGUCCUUGGUUUGUCU_UCAAUUUGCGAGACAGGAGGGAUAUUG_AAGUGCUUCGA__A______UGUAAGUUUAUUAGUCUAAUGUA .((((.(((((((...)))))))))))...(((((((((..(((((((...........))))))))))))))))............................................. (-10.71 = -11.22 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:49 2006