Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,091,458 – 12,091,587 |
Length | 129 |
Max. P | 0.886842 |
Location | 12,091,458 – 12,091,553 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 80.59 |
Mean single sequence MFE | -21.95 |
Consensus MFE | -15.38 |
Energy contribution | -15.18 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.11 |
Mean z-score | -2.13 |
Structure conservation index | 0.70 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.886842 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12091458 95 + 22407834 CCAGGAAUGACUGGGAGCCUUGUAAUCGCAAUUACCAUGGCCAAAAUAUCAAAAGAUA------------AUGCCAUCCUGGCCAGACACAAAAAU---AUGUCGAAACA ((((((.....((((.(((..(((((....)))))...))))....((((....))))------------...)))))))))...((((.......---.))))...... ( -21.70) >DroSec_CAF1 27871 95 + 1 CCAGGAACGACUGGCAGCCUUGUAAUCGCAAUUACCAUGGCCAAAAUAUCAAAAGAUA------------AUACCAUCCUGGCCAGACACAAAAAU---AUGUCGAAACA ((((((.....(((..(((..(((((....)))))...))).....((((....))))------------...)))))))))...((((.......---.))))...... ( -20.90) >DroSim_CAF1 28163 95 + 1 CCAGGAACGACUGGCAGCCUUGUAAUCGCAAUUACCAUGGCCAAAAUAUCAAAAGAUA------------AUGCCAUCCUGGCCAGACACAAAAAU---AUGUCGAAACA ((((((.....((((((((..(((((....)))))...))).....((((....))))------------.)))))))))))...((((.......---.))))...... ( -26.10) >DroEre_CAF1 28206 93 + 1 CCAGGAACGACUGUCGGCCUUGUAAUCGCAAUUAUCAUGGCCAAAAUAUCAAAAGAUA------------ACGCAAUCCUGGCCAGACA--AAAAC---AUGCCGAAACA ((((((.((......((((.((((((....)))).)).))))....((((....))))------------.))...)))))).......--.....---........... ( -20.20) >DroYak_CAF1 29954 94 + 1 CCAGGAACGUCUGCCAGCCUUGUAAUCGCAAUUACCAUGGCCAAAAUAUCAAAAGAUA------------AUGCAAUCCUGGCCAGACAG-AAAAC---AUCUCGAAACA ........(((((((((..(((((...((..........)).....((((....))))------------.)))))..)))).)))))..-.....---........... ( -19.50) >DroAna_CAF1 29533 110 + 1 CCAGGAAGAGCUGCUGGCUCUGUAAUCGCAAUUAUCACGGCACGAAUAUCAAAAGACAGCGUUUAACAUGACAUGAUCCUGGCGAGAUUGGGAAACGCCAUUUUUUAUUA ((((((...((((((.(((.((((((....)))).)).)))..(.....)...)).))))(((......)))....)))))).((((.(((......))).))))..... ( -23.30) >consensus CCAGGAACGACUGGCAGCCUUGUAAUCGCAAUUACCAUGGCCAAAAUAUCAAAAGAUA____________AUGCCAUCCUGGCCAGACACAAAAAC___AUGUCGAAACA ((((((..........(((..(((((....)))))...))).....((((....))))..................))))))............................ (-15.38 = -15.18 + -0.19)
Location | 12,091,458 – 12,091,553 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 80.59 |
Mean single sequence MFE | -27.95 |
Consensus MFE | -16.30 |
Energy contribution | -16.38 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.10 |
Mean z-score | -2.04 |
Structure conservation index | 0.58 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.713302 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12091458 95 - 22407834 UGUUUCGACAU---AUUUUUGUGUCUGGCCAGGAUGGCAU------------UAUCUUUUGAUAUUUUGGCCAUGGUAAUUGCGAUUACAAGGCUCCCAGUCAUUCCUGG ......(((((---(....))))))...((((((((((..------------((((....))))....((((...(((((....)))))..))))....)))).)))))) ( -29.50) >DroSec_CAF1 27871 95 - 1 UGUUUCGACAU---AUUUUUGUGUCUGGCCAGGAUGGUAU------------UAUCUUUUGAUAUUUUGGCCAUGGUAAUUGCGAUUACAAGGCUGCCAGUCGUUCCUGG ......(((((---(....))))))...((((((((((..------------((((....))))....((((...(((((....)))))..)))))))).....)))))) ( -28.10) >DroSim_CAF1 28163 95 - 1 UGUUUCGACAU---AUUUUUGUGUCUGGCCAGGAUGGCAU------------UAUCUUUUGAUAUUUUGGCCAUGGUAAUUGCGAUUACAAGGCUGCCAGUCGUUCCUGG ......(((((---(....))))))...((((((((((..------------((((....))))....((((...(((((....)))))..)))))))).....)))))) ( -30.30) >DroEre_CAF1 28206 93 - 1 UGUUUCGGCAU---GUUUU--UGUCUGGCCAGGAUUGCGU------------UAUCUUUUGAUAUUUUGGCCAUGAUAAUUGCGAUUACAAGGCCGACAGUCGUUCCUGG ....(((((.(---((..(--((((((((((((((..((.------------.......))..)))))))))).)))))..)))........)))))(((......))). ( -28.30) >DroYak_CAF1 29954 94 - 1 UGUUUCGAGAU---GUUUU-CUGUCUGGCCAGGAUUGCAU------------UAUCUUUUGAUAUUUUGGCCAUGGUAAUUGCGAUUACAAGGCUGGCAGACGUUCCUGG ......(..((---(((((-(.(((((((((((((..((.------------.......))..)))))))))...(((((....))))).)))).)).))))))..)... ( -25.30) >DroAna_CAF1 29533 110 - 1 UAAUAAAAAAUGGCGUUUCCCAAUCUCGCCAGGAUCAUGUCAUGUUAAACGCUGUCUUUUGAUAUUCGUGCCGUGAUAAUUGCGAUUACAGAGCCAGCAGCUCUUCCUGG ..........(((......)))......((((((...(((((((....(((.((((....))))..)))..)))))))...........(((((.....))))))))))) ( -26.20) >consensus UGUUUCGACAU___AUUUUUGUGUCUGGCCAGGAUGGCAU____________UAUCUUUUGAUAUUUUGGCCAUGGUAAUUGCGAUUACAAGGCUGCCAGUCGUUCCUGG ............................((((((..................((((....))))....((((.((.((((....)))))).)))).........)))))) (-16.30 = -16.38 + 0.08)
Location | 12,091,497 – 12,091,587 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 79.64 |
Mean single sequence MFE | -17.92 |
Consensus MFE | -14.12 |
Energy contribution | -14.28 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.23 |
Mean z-score | -1.65 |
Structure conservation index | 0.79 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.816162 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12091497 90 - 22407834 AUUCAAGUAUCACAAAAUAUAAGAUAUUUAUAUAUGUUUCGACAUAUUUUUGUGUCUGGCCAGGAUGGCAUUAUCUUUUGAUAUUUUGGC ............((((((((((((((..............((((((....))))))..(((.....)))..))))))...)))))))).. ( -20.10) >DroSec_CAF1 27910 87 - 1 AAUCAAAUAUAAGAUA---UAAGAUAAUUAUAUAUGUUUCGACAUAUUUUUGUGUCUGGCCAGGAUGGUAUUAUCUUUUGAUAUUUUGGC ...........(((((---(((((.......((((((....)))))))))))))))).(((((((((.((........)).))))))))) ( -17.81) >DroSim_CAF1 28202 90 - 1 AAUCAAAUAUAAGAUAUUAUAAGAUAUUUAUAUAUGUUUCGACAUAUUUUUGUGUCUGGCCAGGAUGGCAUUAUCUUUUGAUAUUUUGGC .........((((((((((.((((((..............((((((....))))))..(((.....)))..)))))).)))))))))).. ( -22.90) >DroEre_CAF1 28245 78 - 1 AGCGG----------AGUAUAAGAUGUGUAUAUAUGUUUCGGCAUGUUUU--UGUCUGGCCAGGAUUGCGUUAUCUUUUGAUAUUUUGGC ..(((----------(....(((((((((............)))))))))--..))))((((((((..((........))..)))))))) ( -15.00) >DroYak_CAF1 29993 79 - 1 AACCG----------AAUCAAUGAUCUGCAUAUAUGUUUCGAGAUGUUUU-CUGUCUGGCCAGGAUUGCAUUAUCUUUUGAUAUUUUGGC ..(((----------((((((.(((.((((....((...(.((((.....-..)))).).))....))))..)))..)))))...)))). ( -13.80) >consensus AAUCAA_UAU_A_A_AAUAUAAGAUAUUUAUAUAUGUUUCGACAUAUUUUUGUGUCUGGCCAGGAUGGCAUUAUCUUUUGAUAUUUUGGC .....................(((((.....((((((....)))))).....))))).(((((((((.((........)).))))))))) (-14.12 = -14.28 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:45 2006