Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,089,500 – 12,089,593 |
Length | 93 |
Max. P | 0.541742 |
Location | 12,089,500 – 12,089,593 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 75.79 |
Mean single sequence MFE | -32.16 |
Consensus MFE | -14.40 |
Energy contribution | -16.34 |
Covariance contribution | 1.94 |
Combinations/Pair | 1.06 |
Mean z-score | -1.90 |
Structure conservation index | 0.45 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.541742 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12089500 93 + 22407834 UCUG-GGUGGGUCAGGACGAGUCGGGCCAACUCGGAGUCCAUGUCCAGGUAGU----UAUCGAAAAAAUGCUGCGGCUUAACGCAGCCCACGCCCACU ..((-((((((.((((((...(((((....))))).)))).)).)).......----............((((((......))))))...)))))).. ( -36.90) >DroSec_CAF1 25939 93 + 1 UCUG-GGUGGGACAGGCCAAGUCGGGCCAACUCGGAGUCCAGGUCCAGGUAGU----CAUCGAAAAAAUGCUGCGGCUUAACGCAGCCCACGCCCACU ..((-((((.(((.((((......)))).((..(((.......)))..)).))----)...........((((((......))))))...)))))).. ( -36.40) >DroSim_CAF1 26199 93 + 1 UCUG-GGUGGGACAGGCCAAGUCGGGCCAACUCGGAGUCCAUGUCCAGGUAGU----CAUCGAAAAAAUGCUGCGGCUUAACGCAGCCCACGCCCACU ..((-((((.(((.((((......)))).((..(((.......)))..)).))----)...........((((((......))))))...)))))).. ( -36.40) >DroEre_CAF1 26244 93 + 1 UCGG-GGUGGGACUGGUCGAUCCGGGCCAAGGUGGACUCCUUGUCCAGGUAGU----CAUUGAAAAAAUGCUGCGGCUUAACGCAACCCACGCCCACU ..((-((((((.((((.....))))(((....(((((.....))))).((((.----((((.....))))))))))).........))))).)))... ( -39.50) >DroYak_CAF1 27036 83 + 1 UUGGGGGUGUGACAAG-----CCAAGCCAAG------UCCACAUCCAGGUAGU----CAUCGUAAAAAUGCUGCGGCUUAACGCAGCCCACGCCCACU .((((.(((((((..(-----((........------..........))).))----))..........((((((......)))))).))).)))).. ( -26.37) >DroAna_CAF1 27515 78 + 1 -CUG-GAUGGGAUGUGCCAAG-------------AAAUC-----CCAGGUAGCACUGCAAAAAAAAAAUACUGCGGCUUAACACAGCCCACGCCCACC -.((-(.((((((........-------------..)))-----)))....((...(((............)))((((......))))...))))).. ( -17.40) >consensus UCUG_GGUGGGACAGGCCAAGUCGGGCCAACUCGGAGUCCAUGUCCAGGUAGU____CAUCGAAAAAAUGCUGCGGCUUAACGCAGCCCACGCCCACU .....((((((...((.......((((...............)))).......................((((((......))))))))...)))))) (-14.40 = -16.34 + 1.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:41 2006