Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,084,587 – 12,084,690 |
Length | 103 |
Max. P | 0.597540 |
Location | 12,084,587 – 12,084,690 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 83.01 |
Mean single sequence MFE | -39.60 |
Consensus MFE | -26.37 |
Energy contribution | -26.27 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.36 |
Mean z-score | -1.97 |
Structure conservation index | 0.67 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.597540 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12084587 103 - 22407834 CCAUUGGACAAUGAUAUGUCUUCUGCCUCUGGAUCUCCGGCGGGUGAUGGCACCAAAGCAUCG---AGUUCCUGCGGCUCCGAUGUCUCAGGUGGCCAUCACAACA .((..(((((......)))))..))((.((((....)))).))(((((((((((..(((((((---((((.....)))).))))).))..))).)))))))).... ( -41.40) >DroSec_CAF1 20939 103 - 1 CCAUUGGACAACGAUAUGUCAUCCGCCUCUGGGUCUCCGGCUGGUGAUGGCACCAAAGCAUCG---AGCUCCUGCGGCUCCGAUGUCUCCGGCGGCCAUCAUAACC ......((((......))))....(((.((((....))))..)))((((((.((..(((((((---((((.....)))).))))).))..))..))))))...... ( -34.70) >DroSim_CAF1 21247 103 - 1 CCACUAGACAACGAUAUGUCCUCUGCCUCUGGAUCUCCGGCUGGUGAUGGCACCAAAGCAUCG---AGUUCCUGCGGCUCCGAUGUCUCCGGUGGCCAUCACAACA ......((((......))))....(((...((....)))))..(((((((((((..(((((((---((((.....)))).))))).))..))).)))))))).... ( -35.20) >DroEre_CAF1 21080 103 - 1 CCACUGGAUAACGAUUUGUCCUCGGCCUCUGGAUCGCCGGCGGGUGAUGGCACCAAGGCAUCC---AGUUCCUGCGGCUCGGAUGUUUCCGGCGGCCAUCACAACA .....((((((....))))))..((((.((((((.(((....((((....))))..)))))))---))........((.((((....))))))))))......... ( -41.10) >DroYak_CAF1 21895 103 - 1 CCACUGGACACCGAUUUGUCCUCUGCCUCUGGAUCUCCAGCUGGUGAUGGCACCAAGGCGUCC---AGUUCCUGCGGCUCGGAUGUCUCCGGCGGCCAUCACAACA .((..(((((......)))))..))...((((....))))...((((((((.((.((((((((---((((.....)))).))))))))..))..)))))))).... ( -41.20) >DroAna_CAF1 22601 106 - 1 CCUCUGGACAACGAGCAGUCCUCCGGAUCGGGAUCCCCCCCGGGUCCUACCACCAAGACUUCGGCCAGCUCCUGUGGCUCGGAUGUCUCUGGUGGCGGUCAUCACA .....((((........))))....(((((((((((.....))))))..((((((((((((((((((.(....))))).)))).)))).)))))))))))...... ( -44.00) >consensus CCACUGGACAACGAUAUGUCCUCUGCCUCUGGAUCUCCGGCGGGUGAUGGCACCAAAGCAUCG___AGUUCCUGCGGCUCCGAUGUCUCCGGCGGCCAUCACAACA .....(((((......))))).......((((....))))...((((((((..(...((((((...((((.....)))).)))))).....)..)))))))).... (-26.37 = -26.27 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:40 2006