Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,239,412 – 1,239,516 |
Length | 104 |
Max. P | 0.870516 |
Location | 1,239,412 – 1,239,516 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 88.99 |
Mean single sequence MFE | -23.23 |
Consensus MFE | -16.65 |
Energy contribution | -18.15 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.10 |
Mean z-score | -2.57 |
Structure conservation index | 0.72 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.870516 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1239412 104 + 22407834 ACAA-------UAAUAAAGUAAUUCAGCAAAUUGUCUCCGUUUAAUUGCCUUUAAGCAAAUCGAGAGAUGAGCAGAGGCAUCAAUCAUGAAAGUAAGCAAUGUUGAAUUCU ....-------......((.(((((((((...((((((.(((((.((((......)))).((....))))))).))))))(((....)))..........))))))))))) ( -24.80) >DroSec_CAF1 16881 104 + 1 UUAA-------UAAUAAAAUAAUUCAGCAAAUUGUCUCCGAUUAAUUGCCUUUAAGCAAAUCAAGAGAUGAGCAGAGGCAUCAAUCAUGGAAAUAAGCAAAGUUGAAUUCU ....-------.........((((((((...((((.(((((((...(((((((..((..(((....)))..)))))))))..))))..))).)))).....)))))))).. ( -24.60) >DroSim_CAF1 13059 104 + 1 ACAA-------UAAUAAAGUAAUUCAGCAAAUUGUCUCUGAUUAAUUGCCUUUAAACAAAUCAAGAGAUGAUCAGAGGCAUCAAUCAUGGAAAUAAGCAAAGUUGAAUUCU ....-------......((.((((((((....((((((((((((.((..(((..........))).))))))))))))))(((....)))...........)))))))))) ( -21.90) >DroYak_CAF1 12956 111 + 1 ACAAUGAUAAGUAAUAAAGUAAUUCAGCAAAUUGUCUCCGAUUAAUUGCCUGUAAGCAAAUGUAGAGAUGAGCAGAGGCUUCAAUCUUGGAAAUAAUCAAAGUUGAAUUCU .................((.((((((((..(((((.(((......((((......)))).....(((((((((....))))..)))))))).)))))....)))))))))) ( -21.60) >consensus ACAA_______UAAUAAAGUAAUUCAGCAAAUUGUCUCCGAUUAAUUGCCUUUAAGCAAAUCAAGAGAUGAGCAGAGGCAUCAAUCAUGGAAAUAAGCAAAGUUGAAUUCU ....................((((((((...((((.(((((.....(((((((..((..(((....)))..)))))))))......))))).)))).....)))))))).. (-16.65 = -18.15 + 1.50)
Location | 1,239,412 – 1,239,516 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 88.99 |
Mean single sequence MFE | -20.16 |
Consensus MFE | -14.62 |
Energy contribution | -15.75 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.06 |
Mean z-score | -1.52 |
Structure conservation index | 0.73 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.535056 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1239412 104 - 22407834 AGAAUUCAACAUUGCUUACUUUCAUGAUUGAUGCCUCUGCUCAUCUCUCGAUUUGCUUAAAGGCAAUUAAACGGAGACAAUUUGCUGAAUUACUUUAUUA-------UUGU ..((((((.((((((((....(((....)))(((((..((..(((....)))..))....)))))........))).)))..)).)))))).........-------.... ( -17.50) >DroSec_CAF1 16881 104 - 1 AGAAUUCAACUUUGCUUAUUUCCAUGAUUGAUGCCUCUGCUCAUCUCUUGAUUUGCUUAAAGGCAAUUAAUCGGAGACAAUUUGCUGAAUUAUUUUAUUA-------UUAA ..((((((.....((..(((((..((((((((((((..((..(((....)))..))....)))).))))))))..)).)))..)))))))).........-------.... ( -22.80) >DroSim_CAF1 13059 104 - 1 AGAAUUCAACUUUGCUUAUUUCCAUGAUUGAUGCCUCUGAUCAUCUCUUGAUUUGUUUAAAGGCAAUUAAUCAGAGACAAUUUGCUGAAUUACUUUAUUA-------UUGU ..((((((.....((..(((((..(((((((((((((.(((((.....))))).).....)))).))))))))..)).)))..)))))))).........-------.... ( -21.20) >DroYak_CAF1 12956 111 - 1 AGAAUUCAACUUUGAUUAUUUCCAAGAUUGAAGCCUCUGCUCAUCUCUACAUUUGCUUACAGGCAAUUAAUCGGAGACAAUUUGCUGAAUUACUUUAUUACUUAUCAUUGU ..((((((.(...((((.(((((..((((((.((((..((..............))....))))..))))))))))).)))).).)))))).................... ( -19.14) >consensus AGAAUUCAACUUUGCUUAUUUCCAUGAUUGAUGCCUCUGCUCAUCUCUUGAUUUGCUUAAAGGCAAUUAAUCGGAGACAAUUUGCUGAAUUACUUUAUUA_______UUGU ..((((((.(.(((....(((((..(((((((((((..((..(((....)))..))....)))).)))))))))))))))...).)))))).................... (-14.62 = -15.75 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:50 2006