Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,081,387 – 12,081,486 |
Length | 99 |
Max. P | 0.934944 |
Location | 12,081,387 – 12,081,486 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 90.13 |
Mean single sequence MFE | -38.44 |
Consensus MFE | -28.98 |
Energy contribution | -30.18 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.06 |
Mean z-score | -2.26 |
Structure conservation index | 0.75 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.903730 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12081387 99 + 22407834 GCGCCGUUUACUGCAUUCUUCCUGGCAGCAAAGGAUUAUUUCCGAAACGGCCUAAUCCUCGCUGCGCGA-AAGAGAUGGAGUGCAUGUGCGAGUGCGAGC--- (((((((..((((((((((..((.(((((..(((((((...(((...)))..))))))).))))).(..-..)))..)))))))).))))).))))....--- ( -39.90) >DroSec_CAF1 17763 100 + 1 GCGCCGUUUACUGCAUUCUUCCUGGCAGCAAAGGAUUAUUUCCGAAACGGCCUAAUCCUCGCUGCGAGA-AAGAGAUGGCGUACAUGUGCGAGUGCGAGUG-- ((((((((........((((.((.(((((..(((((((...(((...)))..))))))).))))).)).-)))))))))))).(((.(((....))).)))-- ( -36.20) >DroSim_CAF1 17748 99 + 1 GCGCCGUUUACUGCAUUCUUCCUGGCAGCAAAGGAUUAUUUCCGAAACGGCCUAAUCCUCGCUGCGAGA-AAGAGAUGGCGCACAUGUGCGAAUGCGAGC--- ((((((((........((((.((.(((((..(((((((...(((...)))..))))))).))))).)).-)))))))))))).....(((....)))...--- ( -36.80) >DroEre_CAF1 17978 98 + 1 GCGCCGUUUACUGCAUUCUUCCUGGCAGCAAAGGAUUAUUUCCGAAACGGCCUAAUCCUGGCUGCGAGA-AAG----GGAGUGCGAGUGCGAGUGCGAGCAGG (((((((..(((((((((((.((.(((((..(((((((...(((...)))..))))))).))))).)).-..)----))))))).)))))).))))....... ( -41.00) >DroYak_CAF1 18756 99 + 1 GCGCCGUUUACUGCAUUCUUCCUGGCAGCAAAGGAUUAUUUCCGAAACGGCCUAAUCCUGGCUGCGCGAGAAG----GGAGUGCGAGUGUGAGUGCGAGCGGG .((((((.(((((((((((((.(((((((..(((((((...(((...)))..))))))).))))).)).))..----))))))).)))).....))).))).. ( -38.30) >consensus GCGCCGUUUACUGCAUUCUUCCUGGCAGCAAAGGAUUAUUUCCGAAACGGCCUAAUCCUCGCUGCGAGA_AAGAGAUGGAGUGCAUGUGCGAGUGCGAGC___ (((((((..((((((((((..((.(((((..(((((((...(((...)))..))))))).))))).)).........)))))))).))))).))))....... (-28.98 = -30.18 + 1.20)
Location | 12,081,387 – 12,081,486 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 90.13 |
Mean single sequence MFE | -35.64 |
Consensus MFE | -26.46 |
Energy contribution | -27.14 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.07 |
Mean z-score | -2.57 |
Structure conservation index | 0.74 |
SVM decision value | 1.24 |
SVM RNA-class probability | 0.934944 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12081387 99 - 22407834 ---GCUCGCACUCGCACAUGCACUCCAUCUCUU-UCGCGCAGCGAGGAUUAGGCCGUUUCGGAAAUAAUCCUUUGCUGCCAGGAAGAAUGCAGUAAACGGCGC ---...(((....((....))(((.(((.((((-((..(((((((((((((..(((...)))...)))))).)))))))..))))))))).))).....))). ( -35.90) >DroSec_CAF1 17763 100 - 1 --CACUCGCACUCGCACAUGUACGCCAUCUCUU-UCUCGCAGCGAGGAUUAGGCCGUUUCGGAAAUAAUCCUUUGCUGCCAGGAAGAAUGCAGUAAACGGCGC --..........(((.....(((..(((.((((-(((.(((((((((((((..(((...)))...)))))).))))))).))))))))))..)))....))). ( -37.00) >DroSim_CAF1 17748 99 - 1 ---GCUCGCAUUCGCACAUGUGCGCCAUCUCUU-UCUCGCAGCGAGGAUUAGGCCGUUUCGGAAAUAAUCCUUUGCUGCCAGGAAGAAUGCAGUAAACGGCGC ---....((....))......(((((...((((-(((.(((((((((((((..(((...)))...)))))).))))))).))))))).....(....)))))) ( -39.20) >DroEre_CAF1 17978 98 - 1 CCUGCUCGCACUCGCACUCGCACUCC----CUU-UCUCGCAGCCAGGAUUAGGCCGUUUCGGAAAUAAUCCUUUGCUGCCAGGAAGAAUGCAGUAAACGGCGC ...(((.((....))(((.(((....----(((-(((.(((((.(((((((..(((...)))...)))))))..))))).))))))..))))))....))).. ( -33.80) >DroYak_CAF1 18756 99 - 1 CCCGCUCGCACUCACACUCGCACUCC----CUUCUCGCGCAGCCAGGAUUAGGCCGUUUCGGAAAUAAUCCUUUGCUGCCAGGAAGAAUGCAGUAAACGGCGC ......(((......(((.(((....----((((..(.(((((.(((((((..(((...)))...)))))))..))))))..))))..)))))).....))). ( -32.30) >consensus ___GCUCGCACUCGCACAUGCACUCCAUCUCUU_UCUCGCAGCGAGGAUUAGGCCGUUUCGGAAAUAAUCCUUUGCUGCCAGGAAGAAUGCAGUAAACGGCGC ...(((.(((.((((....)).............(((.(((((((((((((..(((...)))...)))))).))))))).)))..)).))))))......... (-26.46 = -27.14 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:37 2006