Locus 4217

Sequence ID 2L_DroMel_CAF1
Location 12,080,238 – 12,080,331
Length 93
Max. P 0.939706
window6659

overview

Window 9

Location 12,080,238 – 12,080,331
Length 93
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 77.88
Mean single sequence MFE -34.74
Consensus MFE -20.74
Energy contribution -20.54
Covariance contribution -0.20
Combinations/Pair 1.09
Mean z-score -2.15
Structure conservation index 0.60
SVM decision value 1.28
SVM RNA-class probability 0.939706
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12080238 93 - 22407834
-----AUGCUAUAUCUGUGUGCAUAUUGGGCGAGUCGAGUCCUUGGCUCGUCC---------UCGAACUAUCCCACUGACUUGCAAACGGACUGCGAGUCGAGCGCA
-----............(((((.....(((((((((((....)))))))))))---------..............(((((((((.......))))))))).))))) ( -35.40)
>DroSec_CAF1 16816 81 - 1
-----AGGCUAU------------AUUGGACGAGUCGAGUCCUUGGCUCGUCC---------UCGAGCUAUCCCACUGACUUGCAAGCGGACUGGGAGUCGAGCGCA
-----..((...------------...(((((((((((....)))))))))))---------....(((.((((((((.((....)))))..)))))....))))). ( -32.90)
>DroSim_CAF1 16790 81 - 1
-----AUGCUAU------------AUUGGACGAGUCGAGUCCUUGGCUCGUCC---------UCGAGCUAUCCCACUGACUUGCAAGCGGACUGGGAGUCGAGCGCA
-----.(((...------------...(((((((((((....)))))))))))---------....(((.((((((((.((....)))))..)))))....)))))) ( -33.10)
>DroEre_CAF1 16787 89 - 1
--AACUGGCUGUAA-UGCGUGCAUAUUGGGU-----GAGUCCUUGGCUCGUCC---------UCGAGCUAUCCCACUGACUUGCA-GCGGACUGGGAGUCGAGCGCA
--.....((.....-.))((((....((((.-----.......(((((((...---------.))))))).)))).((((((.((-(....))).)))))).)))). ( -32.30)
>DroYak_CAF1 17471 100 - 1
AGAAGAGGCUGUAA-UGUGUGCAUAUUGGGC-----GAGUCCUUGGCUCGUCCAAGGAUAACGCGAGCUAUCCCACUGACUUGCA-GCGGACUGGGAGUCGAGCGCA
..............-..(((((...((((((-----((((.....))))))))))(((((.(....).)))))...((((((.((-(....))).)))))).))))) ( -40.00)
>consensus
_____AGGCUAUA__UG_GUGCAUAUUGGGCGAGUCGAGUCCUUGGCUCGUCC_________UCGAGCUAUCCCACUGACUUGCAAGCGGACUGGGAGUCGAGCGCA
.......(((.................((((.......)))).(((((((.............)))))))......((((((.((.......)).)))))))))... (-20.74 = -20.54 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:36 2006