| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,064,546 – 12,064,649 |
| Length | 103 |
| Max. P | 0.746901 |
| Location | 12,064,546 – 12,064,649 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 80.60 |
| Mean single sequence MFE | -30.48 |
| Consensus MFE | -21.73 |
| Energy contribution | -21.82 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.746901 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12064546 103 - 22407834 CGAAUUCUGUUGGAGCUGUUUGUGUCGCUGGUGCAGAUUGUGCUGCCCAAAAAGCAGAAGGAUGUCAGCGGGGAGAUAGUUUUGGUAAGAGCAUUACAUGUGC .....((((..((((((((((.(.((((((..(((..((.((((........)))).))...))))))))).)))))))))))..).)))((((.....)))) ( -30.90) >DroSec_CAF1 7934 103 - 1 CGAAUCUUGAUGGAGCUGUUUGUGACACUGGUCCAGAUUGUGCUGCCCAAAAAGCAGAAGGAUGUCAGCGGGGAGAUAGUUUUGGUAAGAUCAUUACAUGUGC .((.(((((..((((((((((.(..(.(((((((...((.((((........)))).))))))..))).).).))))))))))..)))))))........... ( -25.80) >DroSim_CAF1 7960 103 - 1 CGAAUCCUGCUGGAGCUGUUUGUGACACUGGUGCAGAUUGUGCUGCCCAAAAAGCAGAAGGAUGUCAGCGGGGAGAUAGUUUUGGUAAGAACAUUACAUGUGC ....(((((((((..((.(((((.....(((.((((......)))))))....))))).))...))))))))).....(((((....)))))........... ( -32.00) >DroEre_CAF1 8198 88 - 1 CGAAUCCUGCUGGAGCUGUUUGUUACCCUGGUGCAGAUUGUGCUGCCCAAAAAGCAGAAGGAUGUCAGCGGGGAGAUAGUUCUGGUAA--------------- .......(((..(((((((((....(((((.((((..((.((((........)))).))...)).)).))))))))))))))..))).--------------- ( -34.00) >DroYak_CAF1 8150 103 - 1 CGAAUCCUGCUGGAGCUGUUUGUUACCCUGGUGCAGAUUGUCCUGCCCAAGAAGCAGAAGGAUGUCAGCGGGGAGAUUGUUCUGGUAAAAACAUAACACUUUC .....((((((((..((.((((((.(..(((.((((......))))))).).)))))).))...))))))))((((.((((.((.......)).)))).)))) ( -33.70) >DroAna_CAF1 10305 99 - 1 CGCAUCCUUCUGGAAUUGUUUGUCAAACUUGUGCAGGUUUUCCUGCCGAAACAUCUGAAGGAUGUUAGCGGAGAAGUUAUACUGGUAAG----UUUUAUUUUU .(((((((((.(((.(((.....)))..(((.(((((....))))))))....))))))))))))......((((((...(((....))----)...)))))) ( -26.50) >consensus CGAAUCCUGCUGGAGCUGUUUGUGACACUGGUGCAGAUUGUGCUGCCCAAAAAGCAGAAGGAUGUCAGCGGGGAGAUAGUUCUGGUAAGA_CAUUACAUGUGC ....(((((((((..((.(((((.....(((.((((......)))))))....))))).))...))))))))).............................. (-21.73 = -21.82 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:35 2006