Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,060,887 – 12,061,007 |
Length | 120 |
Max. P | 0.622240 |
Location | 12,060,887 – 12,061,007 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.61 |
Mean single sequence MFE | -40.02 |
Consensus MFE | -22.40 |
Energy contribution | -21.13 |
Covariance contribution | -1.27 |
Combinations/Pair | 1.53 |
Mean z-score | -1.62 |
Structure conservation index | 0.56 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.622240 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12060887 120 - 22407834 UCUUUAGUCAGUUCUUUGCCCAAGGUCUAUGCUUUGGCCAAUUCAAGCAGUGGAUCAAUCAGGCGUGUUUGCCCAGCAGAGAUUUGCUUAAAUUGAUUAUUUGGUUUUGGCUUGAGAAGC ((((.(((((..(((((((....(((((((((((.((.....))))))).)))))).....((((....))))..))))))).......((((..(....)..))))))))).))))... ( -33.60) >DroVir_CAF1 7974 120 - 1 UAUUUGGUCAUUUCCUUACCCAGGGCCUGUGCCUUGAGCAGUUCAAGCAGUGGGCCACCGACGCGUGCAUUCCCAGCAAGGAUCUGCUAACGUUGGUCAUCUACUUUUGGCUGGAAAAGC ..........(((((.....((((((....))))))...(((.((((.((((((..(((((((...(((.(((......)))..)))...)))))))..))))))))))))))))))... ( -38.20) >DroPse_CAF1 7470 120 - 1 UCUUCAGUCAGUUCUUUGGCCAAGGCUUGUGCUUUGGUCAGUUCAAGGAGUGGAUCGGUCGGGCCUGCCUGCCCAGCAAGGAUCUGCUGACAUUAAUAAUUUGGUUCUGGCUGGAAAAGC ..(((((((((..(((((((((((((....))))))))))).......((..((((.((.((((......)))).))...))))..))..............))..)))))))))..... ( -47.40) >DroGri_CAF1 8445 120 - 1 UCUUUGGUCAGUUCUUUACACAGAGUCUGUGCUUGGAGCAGUUCAAGGAGUGGGCCGUCCAGGCGUGCAUUCCCAGCAAGGAUCUCCUAACGCUGGUCAUCUACUUUUGGCUGGACAAGC (((((((...(((((...(((((...)))))...)))))...))))))).......((((((.((((.((..(((((.(((....)))...)))))..)).)))....).)))))).... ( -40.00) >DroAna_CAF1 4487 120 - 1 UGUUCAGCCAGUUCUUUUCGCAAGGCUUGUGUUUUGGCCAAUUUAAGCAAUGGAUCCAUAAGGCGUGUUUACCCAGCCGGGAUCUUCUCACCCUGGUCAUUUGGUUCUGGUUGGAAAAGC ..(((((((((..((...((((.....))))...((((((.....((....((((((....(((.((......))))).)))))).)).....))))))...))..)))))))))..... ( -34.80) >DroPer_CAF1 7467 120 - 1 UCUUCAGUCAGUUCUUUGGCCAAGGCUUGUGCUUUGGUCAGUUCAAGGAGUGGAUCGGUCAGGCCUGCCUGCCCAGCAAGGAUCUGCUGACAUUAAUAAUUUGGUUCUGGCUGGAAAAGC ..(((((((((..(.(((((((((((....)))))))))))..((((.((((....((.((((....))))))(((((......))))).)))).....)))))..)))))))))..... ( -46.10) >consensus UCUUCAGUCAGUUCUUUGCCCAAGGCCUGUGCUUUGGCCAGUUCAAGCAGUGGAUCGAUCAGGCGUGCAUGCCCAGCAAGGAUCUGCUAACAUUGAUCAUUUGGUUCUGGCUGGAAAAGC ..(((((((((.........((((((....))))))(((((.((((..((((((((......((.((......))))...))))))))....))))....))))).)))))))))..... (-22.40 = -21.13 + -1.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:32 2006