Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,060,597 – 12,060,717 |
Length | 120 |
Max. P | 0.665545 |
Location | 12,060,597 – 12,060,717 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.72 |
Mean single sequence MFE | -43.62 |
Consensus MFE | -24.13 |
Energy contribution | -24.30 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.44 |
Mean z-score | -1.64 |
Structure conservation index | 0.55 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.665545 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12060597 120 - 22407834 CCUACAAUGCCAUUUCACCGUGGUGGCAGGAAGUUCGGGAACUUCUCUUGGAGAGUAAACAAUUUUCGGGCUUGCUGGUGGCCAUUGUAUGCAAAACGGUAGCGACUAAUUUGUGGCGAA ..(((((((((((.((((....))))(((.(((((((..((((((....)))).(....)..))..))))))).))))))).)))))))(((......)))((.((......)).))... ( -38.00) >DroVir_CAF1 7690 120 - 1 CCUACAAUGCCAUCUCGCCGUGGUGGCAGCAGGUGCGUGAGCUGCUGCUGGAGAGCAAACACUUCUCCGGCCUGUUAGUCGCCAUUGUCUGCCGUAUGGUGGCCACACAGUUGUGGCGUA ..(((...((((((..((.(((((((((((((((((....)).)).(((((((((.......)))))))))))))).)))))))).))..)....))))).((((((....))))))))) ( -49.80) >DroGri_CAF1 7921 120 - 1 CUUACAAUGCCAUCUCGCCGUGGUGGCAACAGGUGCGUGAACUGCUGCUGGAGAGCAAACAGUUCUCCGGUCUGUUGGUGGCCAUUGUCUGCAAGACAGUGGCCGUUCAGCUGUGGCACA .......(((((((.......)))))))....((((....((.(((((((((((((.....))))))))).........((((((((((.....))))))))))...)))).)).)))). ( -54.40) >DroWil_CAF1 7152 120 - 1 CAUAUAAUGCCAUUUCGCCCUGGUGGCAGGAAGUACGAGAACUACUUUUGGAAAGCAAACAAUUCUCUGGAUUACUCGUGGCAAUUGUCUGUAAGAUUGUGGCCACAGAUUUUUGGAGAA .......(((((((.......)))))))(((((((.......))))))).............(((((..((...((.(((((....(((.....)))....)))))))...))..))))) ( -31.90) >DroMoj_CAF1 7536 120 - 1 CCUAUAAAGCCAUUUCGCCUUGGUGGCAACAGGUGCGCGAGCUUCUACUCGAGAGCAAGCAAUUCUCUGGCCUGCUGGUGGCCAUUGUAUGUCGAAUGGUGGCCACACGCCUGUGGCGCG ........(((.....(((.....))).((((((((.((((......)))).)((((.((.........)).)))).((((((((..(.......)..)))))))).))))))))))... ( -46.90) >DroAna_CAF1 4201 120 - 1 CCUACAAUAAGAUCUCACCCUGGUGGCAGGAGGUGCGCGAGUUGCUCUUGGAAAGCAAGCAGUUCUCGGGACUACUGGUGGCCAUUGUUUGCAAAACAGUGGCCAGUAAUCUUUGGCGUA ..(((..........(((....)))((..(((((.(.((((..(((((((.....)))).))).)))).).....((.(((((((((((.....))))))))))).)))))))..))))) ( -40.70) >consensus CCUACAAUGCCAUCUCGCCGUGGUGGCAGCAGGUGCGCGAACUGCUCCUGGAGAGCAAACAAUUCUCCGGCCUGCUGGUGGCCAUUGUCUGCAAAACGGUGGCCACACAUCUGUGGCGAA .......(((((((.......)))))))(((((((............((.(((((.......))))).)).......(((((((((((.......))))))))))).)))))))...... (-24.13 = -24.30 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:31 2006