Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,059,181 – 12,059,271 |
Length | 90 |
Max. P | 0.551213 |
Location | 12,059,181 – 12,059,271 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 72.10 |
Mean single sequence MFE | -25.50 |
Consensus MFE | -12.86 |
Energy contribution | -13.78 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.16 |
Mean z-score | -1.56 |
Structure conservation index | 0.50 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.551213 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12059181 90 + 22407834 ----UCUGGGAUC--AUAUAUGU-------------------AUGUACAUUCUUACCUGCCGUCGUAGGAUAGGAAGUUUAUCGACCUCCCAACUGUCGGCUAAGGCACAGAUCU ----..(((((.(--(((....)-------------------)))....(((((((((((....))))).))))))...........))))).((((..((....)))))).... ( -22.10) >DroSec_CAF1 2664 86 + 1 ----UCUUGGGUC--AUAUAU-----------------------GUACAUUCUUACCUGCCGUCGUAGGAUAGGAAGUUUAUCGACCUCCCAACUGUCGGCCAAGGCACAGAUCU ----..(((((..--....((-----------------------(.((.(((((((((((....))))).)))))))).)))......)))))((((..((....)))))).... ( -23.20) >DroSim_CAF1 2679 86 + 1 ----UCUUGGGUC--AUAUAU-----------------------GUACAUUCUUACCUGCCGUCGUAGGAUAGGAAGUUUAUCGACCUCCCAACUGUCGGCCAAGGCACAGAUCU ----..(((((..--....((-----------------------(.((.(((((((((((....))))).)))))))).)))......)))))((((..((....)))))).... ( -23.20) >DroEre_CAF1 2750 108 + 1 ----UCUAGGAUC--AC-UAUAUCCUAGUGAUCCCAACACAAAGGCAAAUUCUCACCUGCCGUCGUAGGAUAGGUAAUUUGUCGACCUCCCAACUGUCGGCCAAAGCACAGAUCU ----....(((((--((-((.....))))))))).........((((((((...(((((((......)).)))))))))))))..........((((..((....)))))).... ( -31.10) >DroYak_CAF1 2704 105 + 1 GGGAUCUGGGAUC--ACAUACAU--------UCCAAACAGAAAGGCAAAUUCUUACCUGCCGUCGUAGGAUAGGAAGUUUGUCGACCUCCCAACUGUCGGCCAAAGCACAGAUCU (((((((((((..--........--------)))...))))..(((((((((((((((((....))))).)))).))))))))....))))..((((..((....)))))).... ( -31.10) >DroAna_CAF1 2777 101 + 1 GCCUCCUAGGAUGUAAC-AAUAU--------UUUAAACUCAAAGA-----ACAUACCUGUCGCCUUAGGAUAGGCAGCUUAUCCAACUCCCAGCUGUCGGCAAGAGCGCAAAUCU ((((((((((..(..((-(....--------..............-----.......)))..))))))))..(((((((............)))))))))).............. ( -22.31) >consensus ____UCUAGGAUC__ACAUAUAU___________________AGGUACAUUCUUACCUGCCGUCGUAGGAUAGGAAGUUUAUCGACCUCCCAACUGUCGGCCAAAGCACAGAUCU ........(((((....................................(((((((((((....))))).))))))((((.(((((.........)))))...))))...))))) (-12.86 = -13.78 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:30 2006