Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,239,143 – 1,239,253 |
Length | 110 |
Max. P | 0.719665 |
Location | 1,239,143 – 1,239,253 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.84 |
Mean single sequence MFE | -39.75 |
Consensus MFE | -30.45 |
Energy contribution | -30.38 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.10 |
Mean z-score | -1.69 |
Structure conservation index | 0.77 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.719665 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1239143 110 - 22407834 AAAGCCGCCAGCAGUCAUUGUCUGUAAAUGCGACUUUUGGGAGAUAGGCGAGGGG--GCA--------GUGGUUGGCCAUAUGAGUCCAUAAUGCCACAUUUUACAGCUGUGCGGCAUUA ...(((((((((.(((.((((((((...(.(........).).))))))))...)--)).--------((((((((.(......).)))....)))))........)))).))))).... ( -38.30) >DroSec_CAF1 16626 101 - 1 AAAGUCGCCAGCGGUCAUUGUCUGUAAAUGCGACUUUUGGGAGAUGGGCGAGGGGA-GCA--------GCGGUUGGCCAUAUGAGUCCAUAGUG----------CAGCUGUGCGGCAUUA ...((((((((((((((....((((...(((..((((((.........))))))..-)))--------)))).))))).((((....))))...----------..)))).))))).... ( -35.80) >DroSim_CAF1 12797 110 - 1 AAAGCCGCCAGCGGUCAUUGUCUGUAAAUGCGACUUUUGGGUGAUGGGCGAGGGG--GCA--------GCGGUUGGCCAUAUGAGUCCAUAGUGCCACAUUUUACAGCUGUGCGGCAUUA ...(((((((((...((..(((.((....)))))...))(((.((((((..(..(--((.--------.......)))...)..))))))...)))..........)))).))))).... ( -38.00) >DroYak_CAF1 12691 120 - 1 AAAGCCGCCAGCGCUCAUUGUCUGUGAAUGCCACUUUUGGUAGAUGGACGAGGGGGGGCAGUUGGGGGGCAGUUGGCCAUAUGAGUCCAUAGUGCCACAUUUUACAGCUGUGCGGCAUUA ...(((((((((((((.((((((((...(((((....))))).))))))))....)))).((..((.((((.((((.(......).))).).))))...))..)).)))).))))).... ( -46.90) >consensus AAAGCCGCCAGCGGUCAUUGUCUGUAAAUGCGACUUUUGGGAGAUGGGCGAGGGG__GCA________GCGGUUGGCCAUAUGAGUCCAUAGUGCCACAUUUUACAGCUGUGCGGCAUUA ...((((((((((((((((((.......(((..((((((.........))))))...)))........)))).))))).((((....))))...............)))).))))).... (-30.45 = -30.38 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:48 2006