Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,051,854 – 12,051,961 |
Length | 107 |
Max. P | 0.564357 |
Location | 12,051,854 – 12,051,961 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.46 |
Mean single sequence MFE | -23.20 |
Consensus MFE | -7.61 |
Energy contribution | -9.53 |
Covariance contribution | 1.92 |
Combinations/Pair | 1.10 |
Mean z-score | -2.26 |
Structure conservation index | 0.33 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.564357 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12051854 107 - 22407834 UUCCCACAAAAGUUUACUUUUUAUGUCUAUGGUUAGGUGCAACAAUCCGAAUUCCUUUGUUAAAAC---AAUCAGGAAAUAAGUGAAUGCGCU-------UAUAUGGGAACA--AACUA- ((((((.(((((....)))))............((((((((..........(((((((((....))---))..))))).........))))))-------))..))))))..--.....- ( -22.11) >DroSec_CAF1 6003 107 - 1 UUCCCACUAAAGUUUACUUUUUAUCUCUAUGGUUAGGUGCAACAAUCCGAAUUCCUUUGUUAAUAC---GAUCAGGAAAUAAGUGAAAGCGCU-------UAUAUGGGAACA--AACUA- ((((((.....((((((((...(((.....))).))))).)))........(((((((((....))---))..)))))(((((((....))))-------))).))))))..--.....- ( -23.40) >DroSim_CAF1 6045 107 - 1 UUCCCGCUAAAGUUUACUUUUUAUCUCUAUGGUUAGGUGCAACAAUCCGAAUUCCUUUGUUAAUAC---GAUCAGGAAAUAAGUGAAAGCGCU-------UAUAUGGGAACA--AACUA- ((((((.....((((((((...(((.....))).))))).)))........(((((((((....))---))..)))))(((((((....))))-------))).))))))..--.....- ( -22.70) >DroEre_CAF1 6039 107 - 1 UUCCCACUACAGUUUACUUCCGA-CUCUAUGGUCAGGUGCAGCAAUCCGAAUUCCUAUUUUACAC----AAUCAGGAAGUCAUUGAAAGCGCU-------UAUAUGGGAACAAAAACUA- ((((((...............((-((....))))((((((..((((..((.((((((((......----))).))))).))))))...)))))-------)...)))))).........- ( -24.50) >DroYak_CAF1 6014 93 - 1 UUCCCACUAAAGCUUACUU---A-CUUUA----------CAACAAUCCGAUUUCCUUUUUUAACCA---AAUGAGGAAGCGAUUGAAAGCGCU-------UUUAUGGGAACA--AACUA- ((((((..(((((......---.-.....----------............((((((.(((....)---)).))))))((........)))))-------))..))))))..--.....- ( -21.70) >DroAna_CAF1 6269 117 - 1 UUCCCACUAAUGUUUAAUUUAUC-UUUUAUGGUUCGAUCAUACAAUACUAAUUCCAUUUUGAACACAAAAAUCGGGAAGUUCUCUAAUGCACUUCCCACUUUAAUGGGAACA--AAAUAU ((((((.(((.((..........-.....((((((((.....................)))))).))......(((((((.(......).))))))))).))).))))))..--...... ( -24.80) >consensus UUCCCACUAAAGUUUACUUUUUA_CUCUAUGGUUAGGUGCAACAAUCCGAAUUCCUUUGUUAAAAC___AAUCAGGAAAUAAGUGAAAGCGCU_______UAUAUGGGAACA__AACUA_ ((((((..((((....))))...............(((((...........(((((.................)))))..........)))))...........)))))).......... ( -7.61 = -9.53 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:27 2006