Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,051,602 – 12,051,702 |
Length | 100 |
Max. P | 0.985741 |
Location | 12,051,602 – 12,051,702 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 72.10 |
Mean single sequence MFE | -28.93 |
Consensus MFE | -17.29 |
Energy contribution | -17.82 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.31 |
Mean z-score | -2.12 |
Structure conservation index | 0.60 |
SVM decision value | 2.02 |
SVM RNA-class probability | 0.985741 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12051602 100 + 22407834 UGCGAAUAUAGUAUCGGCGGAUUUCAUAAGGGGCACUACUCUAGUGGAAACUGCCAUUGAAUACAAUGCUCGUAAGAUUUACAUGUAGAUCUUAACUAU-------------A ......((((((...(((((.((((((.((((......)))).)))))).))))).................(((((((((....))))))))))))))-------------) ( -30.40) >DroPse_CAF1 5509 99 + 1 UUCCAACAUUGUGGCGGUUGACUUCAUACGAGGCACCACCAUUGUAGAGACAGCCAUUGAUUGGAAUCGUCGCAAGAUUGCACAUUAGAUGGAGUUCAU-------------- .....(((..((((.(((.(.((((....)))))))).))))))).(((....(((((...((.....(((....)))....))...)))))..)))..-------------- ( -25.20) >DroSim_CAF1 5795 98 + 1 UGCGAAUAUAGUAUCGGCGGAUUUCAUAAGGGGCACUACUCUAGUGGAAACUGCCAUCGAAUACAAUGCUCGUAAGAUUUACAUGUAGAUCUGAACAA--------------- (((((.(((.((((((((((.((((((.((((......)))).)))))).)))))...).)))).))).)))))(((((((....)))))))......--------------- ( -30.40) >DroEre_CAF1 5769 113 + 1 UGCGAAUAUAGUAUCGGCGGAUUUCAUAAGGGGCACUACCCUUGUGGAAACUGCUAUUGAAUAUAAUGCCCGUAAAAUUUAUAUGUAGAUGGGGAUCCUUUCAAAACCCCUCA ((((..(((.((((((((((.(((((((((((......))))))))))).)))))...).)))).)))..)))).............((.((((............)))))). ( -33.30) >DroYak_CAF1 5807 99 + 1 UGCGAAUAUAGUAGCGGCGGAUUUCAUAAGGGGCACUACUCUUGUGGAAACGGCUAUUGAGUAUAACGCCCGUAAGAUUUAUAUGUAGAUGGGGGUAAU-------------- ........(((((((..((..(((((((((((......))))))))))).)))))))))......((.(((((...((......))..))))).))...-------------- ( -29.10) >DroPer_CAF1 5509 99 + 1 UUCCAACAUUGUGGCGGUUGACUUCAUACGAGGCACCACCAUUGUAGAGACAGCCAUUGAUUGGAAUCGUCGCAAGAUUGCACAUUAGAUGGAGUUCAU-------------- .....(((..((((.(((.(.((((....)))))))).))))))).(((....(((((...((.....(((....)))....))...)))))..)))..-------------- ( -25.20) >consensus UGCGAAUAUAGUAGCGGCGGAUUUCAUAAGGGGCACUACCCUUGUGGAAACUGCCAUUGAAUACAAUGCUCGUAAGAUUUAAAUGUAGAUGGGGAUCAU______________ ...............(((((.(((((((((((......))))))))))).))))).......................................................... (-17.29 = -17.82 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:26 2006