| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,051,077 – 12,051,190 |
| Length | 113 |
| Max. P | 0.620923 |
| Location | 12,051,077 – 12,051,190 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 78.66 |
| Mean single sequence MFE | -28.55 |
| Consensus MFE | -21.90 |
| Energy contribution | -22.32 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.620923 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12051077 113 + 22407834 GAUGUAAUCUACUCAUUCACUUCCUUU-UAGGUUUUGGAAAAGGACUUGGUGUCCAUCGUCUGCUGAUCAGCUACUUGCGGGAUCAGUUAAAGGACCUGAUAGCCCAUCCUUCG .......................((.(-(((((((((((...((((.....))))....)))(((((((.((.....))..)))))))...))))))))).))........... ( -28.20) >DroSec_CAF1 5240 106 + 1 GAUUUACU-------UUCAUUUUCCUU-UAGGUUUUGGAAAAGGACUUGGUGUCCAUCGCCUGUUGGUCAGCUACUUGCGGGAUCAGUUCCAGGACCUGAUAGCACAUCCUUCG ........-------...........(-((((((((((((..((((.....))))........((((((.((.....))..))))))))))))))))))).............. ( -31.10) >DroSim_CAF1 5282 106 + 1 GAUUUACU-------UUCACUUUCCUU-UAGGUUUUGGAAAAGGACUUGGUGUCCAUCGCCUGUUGGUCAGCUACUUGCGGGAUCAGUUCCAGGACCUGAUAGCACAUCCUUCG ........-------...........(-((((((((((((..((((.....))))........((((((.((.....))..))))))))))))))))))).............. ( -31.10) >DroEre_CAF1 5265 99 + 1 -------U-------UUCAUUUUUCUU-UAGGUUUUGGGAAGGGACUUGCUGUUCACCGCCUGCUGAUCAGCUAUUUGCGGGAUCAGUUCCAGGAUCUGAUAGCCCAUCCUUCG -------.-------............-..........((((((....(((((.((...((((((((((.((.....))..))))))...))))...)))))))...)))))). ( -29.30) >DroYak_CAF1 5303 99 + 1 -------U-------UUCGUUUUGCUU-UAGGUUUUGGGAAAGGACUCGGAGUUCACCGCCUGCUCAUCAGCUACUUGCGGGAUCAGUUCCACGAUCUGAUAGCCCAUCCCUCG -------.-------........((((-((((((.(((((..((((.....)))).((((..(((....))).....))))......))))).))))))).))).......... ( -25.30) >DroAna_CAF1 5417 106 + 1 UAUCC-UU-------UUUACAUCCUUUUAAGGUUUUGGAAAAGGCUUGAAUGUGCAUCAUCUGCUGGUCAGCUACUUGCGCGAACAAUUCGAGGGUCUGAUAGCCCAUCCCUCC ...((-((-------(((....(((....))).....))))))).(((..((((((......(((....)))....))))))..)))...(((((..((......)).))))). ( -26.30) >consensus GAU_U__U_______UUCACUUUCCUU_UAGGUUUUGGAAAAGGACUUGGUGUCCAUCGCCUGCUGAUCAGCUACUUGCGGGAUCAGUUCCAGGACCUGAUAGCCCAUCCUUCG ............................((((((((((((..((((.....))))........((((((.((.....))..))))))))))))))))))............... (-21.90 = -22.32 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:25 2006