Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,045,477 – 12,045,582 |
Length | 105 |
Max. P | 0.723321 |
Location | 12,045,477 – 12,045,582 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 95.49 |
Mean single sequence MFE | -20.34 |
Consensus MFE | -17.30 |
Energy contribution | -17.14 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -1.44 |
Structure conservation index | 0.85 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.723321 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12045477 105 - 22407834 UUGCAUUUGUAUUGUGCAUUGGCUUUUCAUGCGGCGCUAAACUUUGUGAACAUUAUAAUAAUUUUAUUUCGCUUAUAAUUUCACAAACACAAAAAAA--GAAAGGCA .(((((.......)))))...(((((((..((...)).....((((((((.(((((((..............)))))))))))))))..........--))))))). ( -21.14) >DroSec_CAF1 6600 105 - 1 UUGCAUUUGUAUUGUGCAUUGGCUUUUCAUGCGGCGCUAAACUUUGUGAACAUUAUAAUAAUUUUAUUUCGCUUAUAAUUUCACAAACACAAAAAAA--GAAAGGCA .(((((.......)))))...(((((((..((...)).....((((((((.(((((((..............)))))))))))))))..........--))))))). ( -21.14) >DroSim_CAF1 6684 105 - 1 UUGCAUUUGUAUUGUGCAUUGGCUUUUCAUGCGGCGCUAAACUUUGUGAACAUUAUAAUAAUUUUAUUUCGCUUAUAAUUUCACAAACACAAAAAAA--GAAAGGCA .(((((.......)))))...(((((((..((...)).....((((((((.(((((((..............)))))))))))))))..........--))))))). ( -21.14) >DroEre_CAF1 6775 107 - 1 UUGCAUUUGUAUUGUGCAUUGGCUUUUCAUGCGGCGCUAAACUUUGUGAACAUUAUAAUAAUUUUAUUUCGCUUAUAAUUUCACAAACACAAAAAAAAAGAAAGGCA .(((((.......)))))...(((((((..((...)).....((((((((.(((((((..............)))))))))))))))............))))))). ( -21.14) >DroYak_CAF1 8436 99 - 1 UUGCAUUUGUAUUGUGCAUUGGCUUUUCAUGCGGCGCUAAACUUUGUGAACGUUAUAAUAAUUUUAUUUCGCUUAUAAUUUCACAAACACAAAAAAAAA-------- .....(((((...((((....((.......)).)))).....((((((((.(((((((..............))))))))))))))).)))))......-------- ( -17.14) >consensus UUGCAUUUGUAUUGUGCAUUGGCUUUUCAUGCGGCGCUAAACUUUGUGAACAUUAUAAUAAUUUUAUUUCGCUUAUAAUUUCACAAACACAAAAAAA__GAAAGGCA .....(((((...((((....((.......)).)))).....((((((((.(((((((..............))))))))))))))).))))).............. (-17.30 = -17.14 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:22 2006